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Mutant Lines
11-4226-1

11-4226-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2946937 [Map]; Strand: w
- AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

CTTGGAGATG TAACTAGGAC CTGATTCTGC TGATACTACT ACTCCTCTAT 
GTTCCTTAGG TTTGATCGTG ACTGGAAGAA GATTGAAGAT TTTGTTGGTT 
CAAAGACTGT GATTCAGGTT TTAAAATAGC TTACTCTGCA TTTTTGGTCG 
CAGTTACTTT GTGGCAATGT TTTCAACTTA TTTGACTTTG TACTGCAGAT 
AAGGAGTCAT GCTCAAAAAT ACTTTCTCAA GGTTCAGAAA AACGGGACAT 
TAGCTCATGT GCCACCTCCT CGACCTAAGC GCAAAGCAGC TCATCCGTAT 
CCTCAAAAGG CATCAAAGAA CGGTTCGAAT ATTTTATAAT ACTTCTTAGT 
TTGGTTATAG AGTTGAGTTT TTAACTCACA TTTTCTTGCA GCTCAAATGC 
CACTTCAAGT TTCCACGTCT TTTACTACTA CGCGAAATGG CGACATGCCG 
GGATATGCTT CATGGGATGA TGCCTCAATG CTGCTAAACA GAGTTATTTC 
ACCACAACAT GAACTTGCTA CTCTTNNNGG AGCANAAGGC ATGCACATTN 
GNCTATCCTT NNNGNNNNNT NCATTNNATN GNNNNNNGNN NNAANANTNN 
GNNNCNTNNN ANGACNNNNN NNGNNCTNTN NNGNNTNTNC NCCNNNTNNN 
CNNNNNNNNG NNNANANGNC NNNTNNNNGG NNNNNNCNTN NNNNNNNGNN 
ANGAN

AT3G09600.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09600.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR