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11-4243-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1287613 [Map]; Strand: c
      • AT1G04620.1 - [+] show detail - coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
        Distance: -1029; Region: intergenic
      • AT1G04625.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 218; Region: intergenic
    Flanking Genome Sequence: 11-4243-1 - 5-prime edge 
    CATGCTTTGG ACCTTGTATC AGCCACTTAT GATCATTTGC TATATTGATG 
    CTTTCCAATT TTAGAGTATT GAAATGGGTT TCTTTGACAA TCATTTTGAG 
    TTAGTCATCA TTCCTTGTTC TGAATCAAGA ATTGGCCTTT TGTTATGTTG 
    TCTAGGTTCT GCTTGTAACT AGAGTAATGC TATTGTAGTC TCTGTTGTTT 
    ATTTGTAGAA TCATAGAGAG TCGTGGAAGC ATGTTTTAGT TGTTACTCTC 
    GATTTCTTGT TGATGTTGTG GTGTTATAAA TTGAGCGTTT TAACCAATAC 
    AAGTTAGGAG ATGGTTAGTA TGTGACTATG TGTTAGTGGC CATGTATGTA 
    GTTCGATCAG ATAATCTGAA TGATGTGCTA AAGAGCTTGC ATAGGAAGAC 
    TGCCTTTGTG TTAGCTTGCA TAGAGACTTG TTGCAATATA TGAGACTGAA 
    AACTATTATG TGAAAACTTT AATTTGTGTA CAAATATTTT TAACTCTTAA 
    AATTAAACTA ACATTGTACC AATTAGCACA TGAAAGAAAC ACAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5934347 [Map]; Strand: c
      • AT3G17350.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4243-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTTTAANC 
    ATGGANTACG AGAAGANAAC GATGGTAATC TTCNATCCGG CGATGTCTAC 
    TTGCTCGATT CTTCAGCCTC ANCACGATGN TCGAAANGGC TGATATTCAA 
    AACACGTCTC ATTAANACCT TCGTACAGAC ACCAGGTGGC CGTGACTCAC 
    CAGGATTAAA ACAAATNAGC CGGTTTCGTC GGCGGATGAA ACGGANAATT 
    ATCGGTCACA GAAAAAATAA ACTCTCGCCT TTTTTTTNTG GGTTTNNNGN 
    AAAAACGGGN NTCCCATNAN TNNTGNANNC TTGCCAACTN TGTTTTNGNC 
    CAAAANNNCC TNTTTCCCAA AANAAGGCTN NNCCNTTTTT TTGCNTCCTC 
    CAAATNTTTT TNTGNCGTTT TATACCCAAA AANNNCTCGT AACTTTNNTA 
    CAAGAAANNC NGCCCNTGGN NGGGGCNNTN NNACTGTNTT TCGGGGNCCA 
    AGATNGNCTT NAAAANTGGA CCATTAGGCA GAAGANANNN TNGAAATNTN 
    NTNTAAATNC NAGCAANCCC AGGGCGNTGG ATGGATAGGG ANNNTTTTAA 
    AAATTGGGGN GCCCCATNAG CTTTTANAAN TCCTGCGNAT NANGAATCTC 
    CTTNTGTTTT TNTNAGCCCC CTNCCNCNCN AAACATTGTN TTCNCCGTTT 
    ACCCAAACNA AAAGGNTTTT TTGGAAANTN ATAACTGTCN TTTNTTCAAA 
    ANGAAAAACA CNCCCTGNNA NCCNACTTNG GTTNTNA

AT1G04620.1

Model type
Protein coding
Short Description
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Computational Description
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 499 Blast hits to 498 proteins in 165 species: Archae - 202; Bacteria - 188; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04625.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G46460.1); Has 296 Blast hits to 296 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G17350.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR