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11-4257-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19138619 [Map]; Strand: w
      • AT3G51600.1 - [+] show detail - lipid transfer protein 5
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-4257-1 - 5-prime edge 
    ACAATAATAA CAGTAAAAGG ATACACTAGT GTGTATATAG TGTGACATCT 
    TAATTATTTT TAATACTCTC TCATCGATTA TATGAAAACC CTTCAACGTC 
    TATCTTCTTT TGATCACCTG ACGCNTGCAA CCAACCAAAT ACATCAATCA 
    TATGGTTACT ACCACTCCAT TAAATATTAG GACCTCAAGT AAAAATGTAA 
    TAAATATAGA GTGAGATAGA AGATAACGTA CGTGTTACAG TTGGTTCTGG 
    CACTGATGGG GTAAGAGATC CTAACACGGC AAGCACCAGG GAGACGAGCA 
    GCACGACCAG CGTTAAGTCG AGAACCCAAG GCTCTCGCTG CTCCCTGGAT 
    ACAACGACAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19138555 [Map]; Strand: w
      • AT3G51600.1 - [+] show detail - lipid transfer protein 5
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-4257-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGATTATTGT TGTGTTTCTA GATTTTGTGT TTTCATGTCT TTCTTTGTAT 
    ATGACGGTCC ATTTAATTGG TCGTCTGTGT TATGTACTCC TCTAATGATA 
    TATTGAATTT ACGATTATGT ATTATCTTCA AACTCTTGCC ATTAACNTTT 
    GGTCACAGTT CTGCTTTTGG ATGCATCCTA TTCCTTCTTC TTCTCCACAG 
    TCCGTACACA ATTCTCTTAA CACGATTATT ATCAGTTGAC TTGTGTAGAT 
    GTAAATAGAA TAAGTTATAA TCAAATATTA ATTAAGATAG TCCAATAATG 
    GACTAATTTG TAAAAAGAAA GAAAGTAAAA CTATGTTTCG ATTCCCTAAT 
    ACATGTGGAA CCAACAAACT ATAGAATATC ACTGAAATAA GGTTTGATTT 
    CATTAATTCA TCCTCAAATA TCCTCAAAAT TCACTCTAAA ATATCCTCAA 
    GAGTGTACTC ATCACTCTTT GTTAACCAAT CCTTATCTAC TTCTTCAAAC 
    TCTCACAACT TGCTCATTTA CACTTCTCAC TCTATCATTC GTAATATTTT 
    CGTCGGTGAG TGTGTAATAT GTCNATCGAC CCTACATGCA GTTGCTAAAG 
    ACACCCTTAC CTTTTTNCTT TCTCTTGTAA GCGTTACCCT TTTTAAAAGN 
    GAAAAACCNG AAATNTCCCA AAACNANTNA AAATGNCNAT CGACCCTAAA 
    ACTTTTACTG AATNCCCANC CCCGGNCCGN NANCACNCNN CC

AT3G51600.1

Model type
Protein coding
Short Description
lipid transfer protein 5
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
lipid transfer protein 5 (LTP5); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 1 (TAIR:AT2G38540.1); Has 1074 Blast hits to 1073 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR