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11-4270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 460776 [Map]; Strand: c
      • AT1G02310.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -80; Region: promoter
    Flanking Genome Sequence: 11-4270-1 - 3-prime edge 
    GTGNNNGNTG NACATNACAN NTGTNNTNCA GNNTACNTNN TNAANANCTA 
    NNCATNTCTG CCACCNTANC GGCTACCNAC ANTTGNCAAT ATGTACACCG 
    GAACGCTGTG AAATTTAGAT AAAGTTNTTT TTAACNGTTT ATCTCAAATT 
    CACCTTTTGA AATTATATTC TTGGGTTTAA GAAAACTCTT TACTTTTTAA 
    ACTGATACAT ATTATTTAAA GAGAAATAGA TATTTTATAA TTTGGCTTAA 
    AAGCGTTTAT TTTTTGGCTA ATTGGCTTGA AAGCGTAATA TTTTTCATTT 
    CCCCATTAAA ACGGTTTCAG ACTGTTANAT TTAAATAAAT TGTAATCTTG 
    TTGCATTAAA GGTTTTAAAT AAATGATTTT GGCGAATATA ATATTTTCTA 
    GTAAGTCATT GTAAAGTTAA AAATAGATAA TTTTGGNTTN ATAACATATN 
    GATGATACNG TAATCGAAAT AATATGATTT TTGGTTGAAT AAAATGATAC 
    CAANNCGGGG CCGNNAACNA CNNNNNGCNN NTAAAAATGT ANCCNNAGAG 
    AACGCAANNG ANANAGGACC TTANNNNAAN NAANNCTTNT GCNNNCAGCA 
    NNGNCNGAAN AATNNGGNNA TNNNGGTTTN GNCNNNTGNC GTAATGNTNA 
    NANGGANNNC TTTANCANTN ATNNNNAGAN NNAGANAATT ANCGCNANNN 
    NCNANNGNNN NTTNNNNATN ACNGNNATNT NGNACNTGCA NAAACAANA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 460660 [Map]; Strand: c
      • AT1G02310.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4270-1 - 5-prime edge 
    TTTAACACCA CACACANAAN TGTCCTTAAC GTTTCATGTT GTGTCATTCT 
    CTTTTCTTCA AGTCGGCNAA AGTATCACAA TGGGNAACAA AANNACCGTT 
    TTTCTTGTTC TTTCTTCCGT TTCTCATCGG AAACAACCGC AATTTGCGTN 
    GCCGNCGANA CNGGCTTTGT CGGGNGGAAA NGGGACCCAG TTNGAGAGGA 
    ACNTTTTTTT TTTTTTNACN NGGGCCGGCC GTNAANGCGN NNNGGANGAN 
    GGGGNGCCCC CNNCTGCCCN NGNNGCNTTA NGNGNNGAGC ATAAAAAAAA 
    AAAAACNGTN CGCNNGCNNG TGGGGGGGGA GCAAGACCCG CATACGTAAT 
    TTCGTGNNNC NCGCGNNCNN GGGCGCGGGN ANGNCGCCGC GNAANTNTGA 
    CNNTCNTNTC CCGTTCGCCN NNAGNNNNNG TCGTGNGTGG NCAGNGGGNC 
    NGGCGGNNGN GNGGGNAGGG AGGNACGAGA GANNNNANNC GNAACGCAAN 
    AACCGNACAC NGGGANGGGA NGCCAGCGGA CANCNGCCNC GCNTGNNNAC 
    CNCCGNGAGG GTGNAGCGGC GCGAGAGTGC GCNNGCGCNN NCNANCCCCA 
    NNGANNGCNG NGNAAAANNA NGNNNGANCG NNCNNCNGGG GNGCGGGGCG 
    NNNANACNAN CGNAGGGNGN GATCGTNGAC NTANACANCT NTCACGNANG 
    GACNNGNCGG GANNCNCANC GTNAANCCAG GCNNANGAGC ANGNNAGAGG 
    CAACGANNAA NNGATGAGNC NCAAACANNN NAACGTNCAC GNCNNTNATA 
    NNACANGACN ACAGNAAAAA N

AT1G02310.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR