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11-4278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19607058 [Map]; Strand: c
      • AT5G48380.1 - [+] show detail - BAK1-interacting receptor-like kinase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4278-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTGGGAGTCA TTGCGTTCTC ATCATCAGTG 
    TCTCTCTTTT CTTTGCCCCA TTCTTCACGA ACTTTCACTA GACGACGACG 
    ACGACGATCC AAAGTCCGAG TCAACTCACT CACAAAGACG ACTCCTTTAT 
    TAAATTATTC CCAACTCCTT TCATCATCAT CATCATCATT ATCATCATTC 
    ATTAACCACT TAACCACAGA TGCGATTTTC TTCTCCTTCT TCATTGTGCT 
    CTTCAACACT TATGAACAAG AGCACCACCA CCACGACAAC GACGACTACA 
    AAGACCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20144863 [Map]; Strand: w
      • AT5G49630.1 - [+] show detail - amino acid permease 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-4278-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATACA 
    GGAGGAAGAA AAGTGCAATT ATGTGGATTG GCTCAATACG GGAATCTGAT 
    TGGAATAACA ATCGGCTACA CAATCACAGC TTCAATTAGC ATGGTGTAAG 
    TTTTCTTTTT ATTTACTTTT TTTTATTTAC NTTCTCTTTT ATGATAAATA 
    TTTTATTATC ATTTGTTAAA TAGTCAAAGT CAATAATAGC AAACTCTCCT 
    TTTCCTTAAC TTATTATCAA GCAGGTTTAT TAAGTCTTAA GGCTGGACAA 
    CAAATGCCTG ATTTTATTAA TTTACACTAC TACATTTGAA GACAAAGTGC 
    TATGTCTATG ATGATAGGCA GCAATATGCT ATATAAAATT CCATAAATCT 
    TTTTTTCTTT GGCATGTGTT AGTTATTCGA TTTAATGGGC TAACTTATAT 
    TGGATCTAAT GGAATGTCGA ATGAAACAAT TTCAGAAAAA AATAAAACAA 
    TCAATAATCG AGTTTGATCT ATGATGATTG TCGAATT

AT5G48380.1

Model type
Protein coding
Short Description
BAK1-interacting receptor-like kinase 1
Curator Summary
Encodes a BAK1-interacting receptor-like kinase named BIR1. Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway.
Computational Description
BAK1-interacting receptor-like kinase 1 (BIR1); FUNCTIONS IN: protein kinase activity; INVOLVED IN: negative regulation of defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G28450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49630.1

Model type
Protein coding
Short Description
amino acid permease 6
Curator Summary
Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
Computational Description
amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR