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11-4283-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2588840 [Map]; Strand: w
      • AT2G06520.1 - [+] show detail - photosystem II subunit X
        Distance: -482; Region: promoter
      • AT2G06530.1 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-4283-1 - 5-prime edge 
    CTTGAAGGTC ACTATCTATA CCTCCACTGT CCTCAGCTCC GGTCGCCTCA 
    GCTTGTACCA CCTTGTTCTT TGCTGCGGGT ACTGCGACCG CACCAGATGG 
    AGCATTCACC AGCTGAAACA TAGATGAATC GGTCAAATCG AGTTAAGCAT 
    CTTACAGGTG GGAAATAGAA CTAGGAATGT TATAGATGGA TACAATCAAG 
    TTAAGTAAAA CCAAATCTCA CGTCACGCAG TATCGGTTTC AGTTCAAGGA 
    AGTTTAAGCT ATGATAAGGT CCATTCTGGT TTGGNCTATT GTGAATATCT 
    AACAGCTATG GTAAGATTGG TTCGATTGAT CCATAAGTGG AATAAGTAAA 
    TGGTAGCTAA GATATTGATG TATTTACCTC TTGGTTGATG TCGATACCGA 
    TCTCGTCAAG GACTTGGCTA ACAAGATCNT CANNCTNTTN TTCTTCCTCA 
    TNTNCTTNCA NAGCNTNATC NNTAGCNTNT NCCATANNCT NNTACACNAT 
    NNNCNTNNNN TNNNNCNGNN NNTNAAANNN NNNNNTNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2588724 [Map]; Strand: w
      • AT2G06520.1 - [+] show detail - photosystem II subunit X
        Distance: -366; Region: promoter
      • AT2G06530.1 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 11-4283-1 - 3-prime edge 
    CCTTCAAGCA AGGTTGGATA ACCTTAGAAA AATGTGAAGC CTTTCCTGTT 
    TCTGTATCAT AATATTACTG AGGCTGATCA CTTTTCAATT TCAAAGGCAA 
    ATGTTGCAAA CGATGTGTTA ACGTTTTGGG GGTGGGTTTG TAATAAATTC 
    ATAATTTGAG CCCTATATTA TAAAACTGAT TATTGTTCAA ACACTTTGTA 
    TATAAACCAA TTTAAGGGTC TGAGAGATTT GAGAACCAAA ATTGTTAGAA 
    TCGAACCGAA ACTATGCACC TCTCAATTCG GTTATGTCAA TTATCGAACC 
    GGACTCGAAG TACGATATTT TTTTTCACGC CCAATAGCAA CCACAGTAAT 
    CGGAAATGAA GATAACGTTA TCTATCCAAT GAGCCATTAG GAAGCTCANA 
    AGCTGCCACG TAAGATTCAT ATCTCACATC TCCAATCTCT GAACATCACT 
    AACCTCAAAT CTCTCTTCTC AAATACCATT CTTCTCAGCA ACTTCACACA 
    TTTCGAAAGA GAATCTCAGA AAGATCAATC TAGAGAGACC AAAAACAGAT 
    CGGAAGAGAT GGCTTCTACC TCCGCGATGT CATTGGTCAC ACCACTTAAC 
    CAGACCCGTT CGTCTCCTTT CCTCAAGCCA TTACCTCTGA AACCATCCAA 
    GGCTTTGGTT GCAACTGGAG GCANAGCACA NAGGCTTCAA GTTAAGGCCC 
    TCAANATGGA CAAGGCTT

AT2G06520.1

Model type
Protein coding
Short Description
photosystem II subunit X
Curator Summary
Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.
Computational Description
photosystem II subunit X (PSBX); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbX (InterPro:IPR009518); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G06530.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
Link
InterPro Scan - TAIR