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11-4295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2563419 [Map]; Strand: w
      • AT1G08170.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4295-1 - 5-prime edge 
    GAGGTGAAGG TTCATCTCGA ACCTCCACCG GAGTCTCCGG CGGCTGAGGT 
    GAACTTTCAT CTCGATCATC CACCGGAATC TTAACGGTGG TAACGTTTTC 
    TCCGACGGGA AGTGACCGTT CGTCTGGAAC CTCCACTGGA ATCTCAACGG 
    TAGTAACGTT TTCTCCGACG GGAATGGAGA AAGTGAGATC TTGCGTCTCT 
    TGATCGTTCG CTGTCTCGGT GATCACACAC GGATCTCCTT CTTCCGTGAC 
    GGTTACTTTG ATTGTCTCTT CCACTACTTT CTTCTTCTTC GTCACGGAAA 
    CAACCTTTGG TTTTCTCGGC GCCATTTTCT TCGTTAGAAA TAACCGAAAA 
    TGTTATGTGG TTAAGATTTA AAAAGGGCGT TTTGGGATGG GTCGTAACAG 
    TACTTCTGCG ATTGACATGT GGTGCCACGT GTCGTTCGAA TACCTTAGCA 
    TTGGTGATTA ACTGTCTACT ACGCGGTGGT TATAAAAACT AAAAAGTAAG 
    AAAAACTTAT CCGGTGATTC GTATCTGTTT TAAATAACTA GCCCAAAGCC 
    CGGTGGGCAT ATAAATGGGC TTAAATGACT AGATCTAAAC GGGTCTCAAA 
    AGCCCAATAC AACATCCTTA ACCGNACTTA ATTTTACACA GNATATAATN 
    NNNGNTTNCC ATTATATATT TTTAATGAAA TTATNTGTGA CCAAACGANN 
    CCNCNATNAC CCTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2563294 [Map]; Strand: w
      • AT1G08170.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4295-1 - 3-prime edge 
    GCCACCGGAA ACTCCCGCTT CCAAGAGTGA AGGCACTTTG AAGAAAACAG 
    ATAAGGTTGA GAAGAAGCAG GAGAATAAGA AGAAGAAGAA AAAGAAGAAG 
    AGAGACGATT TGGCGGGAGA TGAGTATAGG AGATATGTGT ATAAGGTGAT 
    GAAGCAAGTG CATCCGGATT TAGGTATAAC GTCGAAGGCG ATGACGGTGG 
    TGAACATGTT CATGGGAGAT ATGTTCGAGA GGATAGCGCA GGAGGCAGCG 
    AGGTTAAGCG ATTATACAAA GCGGAGGACG TTGTCTTCGA GGGAGATCGA 
    AGCAGCGGTT AGGTTGGTTC TGCCTGGTGA ACTTAGCCGC CACGCTGTCG 
    CTGAAGGCTC TAAAGCTGTT AGTAACTTCG TTGGTTATGA TAGTAGGAAA 
    CGTTAGTTGG TTTTCATTCC CTAATCGTTG TATCTTTTTT CGTGTAATGT 
    TTTTTTCAAC TTGACTGTTA GTGTAAGGTT TAACTTANAG AGTATGGTTT 
    CTATAGTTAT GTGATTATTT CGTTTTATGT TCTATACATG TTCTGTANAA 
    TATATGTTAT GTTGTTGAAA ATGGAGATGG ACTTGATCAT TTGAATAGTG 
    GTTTATTTAG CTTTCATATT TTTTTTCTCT TGCATTTGTT GNGTTGCTAA 
    AATTANTGAC ATCCACTANA GTNTAATATT CTTAACCACT AGGTGACCTT 
    GTGT

AT1G08170.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1); Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0; Bacteria - 51; Metazoa - 2306; Fungi - 230; Plants - 467; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link
InterPro Scan - TAIR