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11-4304-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 73889 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-4304-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    GGAGAGAGAG AAAGGAGGAA GAGTCGAAGA GTGATTGTTT TTTTTTTTTA 
    ANTNGTTTTT TTTNGGGAAN TTTTAAANTT TTTGGGGGGG CCCCNAAAAA 
    NCCCNNNNTT NTTTTTTTNN CCAAAGGGGT TNNTTTNGAA NTAAAANTNA 
    ANTTTTTCCT NTTNNTTTNT TNGGGAAAAC CCCCCCCCNA AAANCCCCCA 
    AAAATCCCCN NNTCCTNCCC CCCNNTNCNN NAANNANNAA TTTTTNCCCT 
    TNCCTNAAAN GGNCNNANTA AANTNCCCCN ANTANCCCNT TTCCCCCNTN 
    NNNTNAGGGG CCNANAANNN NNCCAANTTT ANTTCCTTTT TTTAANNAAA 
    AAAAAAAANN NTNCCCNAAA NGNAANCCCC CCNTTNAAGG NCNNCCCCCC 
    CTTTTTNCCC CCCCAAAAAN CCCNNNNNNC CNNNCCCCAA AACCCCCCCT 
    TTTTTTTTTT NANTNTNAAA ACCNATTTTN NTTTTTNNCT TTTTNCCCNN 
    ANCCCCCCNC CCCCTTTTNA CCNTTTTNAA NTGNCCCCCC CCTAANTTTT 
    NGGGGNCCCC CNTNNACCCC CCCTTGCCNT TAATTNAAAC CCTTAANCCA 
    ANNTTTTCCC CCNANNACCC CNTNTTTNTN ANNCNCCCNN CCNGGCCCNN 
    NNCCCCCCCN NNCCCCNTT

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR