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11-4315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3119156 [Map]; Strand: w
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G10114.1 - [+] show detail
        Distance: -335; Region: promoter
    Flanking Genome Sequence: 11-4315-1 - 5-prime edge
    CTCTTCCTCA CTCCACTTCT CTCTCTGCTT AGTTACTGTG TACGGTTTCC 
    TAACCTTGAA GAACAATACA CAGAGGAGAG GTAAGATCCA CTGGCAAAAT
    CTGAAATTTG TCTCTTCTCC AAAGTTGTGA CAAAACATAT AGTACCTTGA
    CAACGTTTTC AATCCAATGA CTGCTGGTTT CAGGATTAAT TCCTTCATTG
    GAATTGCAAC TTCCATTTTC TACATTGCTG CTTAGTTCCT CACTTCGATC
    CTGAAGTGGA AACAAGCTGA TTTCGGGTTC GGTATATATT ATAATCATCA
    TTACCATATT GGTTACTTTC TCTACGCTAT TGCCGTGCTC GCTAAGTTTG
    ATCCTTTGTG GGGAGAGAGA TACAGAGCTC AAGCGTACAG TCTATTGGCG
    GATTTCATGA CGTTTGGGAG AAAAGATGAT AATAATTCAA ATTCTAGTTA
    TCCGCGTTAC CTGAAGAACA TGATTGAGCC GNGGTTAGAT GGTAGCTTCA
    AACCTAACGC GTTACCTGAA GAACATGATN GAACATGATN NNACATGTNN
    GNTTTTGGTT NCCTTTNNAG GATNNNNTCC NTNCNANAAT GNGANNANNN
    ACACTNNNNT NANTNANGCC CNNNGNNNNN NNNNGGNC

AT3G10113.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G18330.2); Has 1478 Blast hits to 1458 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 1117; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR