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11-4339-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30054325 [Map]; Strand: c
      • AT1G79900.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: -389; Region: promoter
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: -559; Region: promoter
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: -559; Region: promoter
    Flanking Genome Sequence: 11-4339-1 - 5-prime edge 
    ATTGGGCCCA TAATAAAAGC CAAGCCCATA TGACAAGGTA TGCCTGTACA 
    TCTTTAGGGG GTTTATATGT CTCTGATGAG TACAACAAAA TCTGAATATG 
    GTTGATGAGC NTTGAATTAT ATATTGTCTT AATTCCTTCG AAAACATAAG 
    TAAATCATTT GGTAACNTTG ACGTCTCTCT ACTCAACCTT TTTTTTTGTT 
    GGCGTTCTTG TCTCTTTGTA TANAAAAAGA TGTTCATATG TTTGTGTACT 
    CTACGTTACT TCTTCTTCTT CTTCATGTGA CGATGATGGG GATTACGTGC 
    ACCCCTTCTT CCTTAAACAA AATCCATTAG GGAGTTACTT TTTGTTTTGA 
    TAGTGTAGTT GTAGTGGAGC ACTGANAGTT ATCAAATGAA TGAGGATCTC 
    TTGAATAATA AANAATTGGA GTGTGGAATT AGGATGGATC TAATTTCATT 
    AATTAAAGAG GAGCATGATT ATCATTTTTT GTTAATTTAA TTTAATAATG 
    GTTAATGTGA AAAACAGAGG AAACTANAAN AANANAGTTT TGGCAGGAAA 
    TGTANGTGGC GGGAGTGGGT TGGGCAAAAA AAATNATGGT GACGGNGCAN 
    CTCCAAATTT TCTCTAATCT TTTGACACTT TTNTATAAAA CTCCCCAAAC 
    TGATTNTNTN TGACTGCCTN ATAANNNATT ANAANANNTN CCCCNGNANN 
    GNNNNTNNTT TNTTTTNGNN AAN

AT1G79900.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Curator Summary
encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol
Computational Description
BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR