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11-4347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11528018 [Map]; Strand: w
      • AT1G32049.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -427; Region: promoter
    Flanking Genome Sequence: 11-4347-1 - 5-prime edge 
    CTCCGAGTCA CTGAAATAAA GCTCAATAGT AACCAAGCTC CGATCCACCA 
    CTTCGTTGGA CACATCAGCC ATCTCTTTGG GGCTCTTGCA GCTCTCATGC 
    TCATCTCCAT TGTTTCTCCC ATCTTCACTC TCATCGTTGC CCCTCTATGG 
    CTTGTTTGGT TCTTTGCTGT TATGTATGTC TTTTTAGTAG AGGTCATTTG 
    CATGGTGGAG ATTAAGCGTC CAGGGGACGC AAATCTTACG GACCAGATCT 
    CTCAAGTATA GTAGTTTACA CGTAGCTTGA GATTCCGAGC ATCATGTTAA 
    TGTATTAGTA GTAATTTATA GCATAAAATC ATGTGTTTTT TCTTTCTAAG 
    TTTTCGAACC CTAATCGTGT ATATAATAAA AGAATGAGTC GGGCCTACTT 
    TAAAGCCCGA AACAAATAAC CAAAACGGCC CATATACTTC TTAGGGTTAG 
    TTTCGTCAAA ATACCAATAG TTCCAAATTC CGCGTTTCGT GTGGGAGAGA 
    AAAAGAAGAA AAAGAGAGTC CAACCATATC AGTTTGCTTT CACAGNGGAG 
    TCGGNGCTCT CTCTTTTNNN CTTCTCTCTT TCTTTNNACC TCTCGCCGGA 
    TCTNGGNGAT CTTATAGGAN ACAAATCTAT CANNNTCGNN ATTCTAGGAT 
    CTNTGACCAC AATGAATNGN CNCCACNATC CNANNCNTTN NNNGAGGACN 
    AANAAANNNN NANCCTTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11527902 [Map]; Strand: w
      • AT1G32049.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -543; Region: promoter
    Flanking Genome Sequence: 11-4347-1 - 3-prime edge 
    ACTCGGAGGA CGACGTAGAT CAGAATAAAG ACACAGAAAG AGAGCATAGT 
    GGCTTGACGA TCTGCAGTAT TGATTGAAGC TGAGGAATT

AT1G32049.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT1G32050.1

Model type
Protein coding
Short Description
SCAMP family protein
Computational Description
SCAMP family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 679 Blast hits to 677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 14; Plants - 225; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR