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11-4354-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9727680 [Map]; Strand: c
      • AT2G22830.1 - [+] show detail - squalene epoxidase 2
        Distance: -1410; Region: intergenic
      • AT2G22840.1 - [+] show detail - growth-regulating factor 1
        Distance: -1076; Region: intergenic
    Flanking Genome Sequence: 11-4354-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGCA TTACTTTGAA AAATGTGCAT CTTGAGTTTT 
    GCATTCGTAT CAAATGTTCA GAAATTCAAA TTCACCTTAC CTTTCTATTT 
    TCCAAAAAGG TTAAAATGAT TTTTTTTTTT TNAATTNGCT TNNAAANAAA 
    AAANNGGGGC TTTTNAATNN NNAAAACCCT TTTCGNNGAA ANNAAANNTN 
    AANGGGNCCN AAAAGNNTNG GNGGGGNNCG GGNTCNCCNC CCNGGNCCGG 
    NANCCNCCCG NGCCCCCTAN AAA

AT2G22830.1

Model type
Protein coding
Short Description
squalene epoxidase 2
Computational Description
squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 3 (TAIR:AT4G37760.1); Has 2838 Blast hits to 2834 proteins in 830 species: Archae - 46; Bacteria - 1617; Metazoa - 134; Fungi - 223; Plants - 197; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22840.1

Model type
Protein coding
Short Description
growth-regulating factor 1
Curator Summary
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower
Computational Description
growth-regulating factor 1 (GRF1); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 714 Blast hits to 669 proteins in 68 species: Archae - 0; Bacteria - 24; Metazoa - 65; Fungi - 20; Plants - 548; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR