Home
Mutant Lines
11-4380-1

11-4380-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 1188624 [Map]; Strand: w
- AT1G04400.1 - [+] show detail - cryptochrome 2
  Distance: -107; Region: promoter
- AT1G04400.2 - [+] show detail - cryptochrome 2
  Distance: -348; Region: promoter

TTTAAACGGT AGAGGTATTT TACTTACCGT TACCGACCGT TTTCATCCNT 
AGNTANANNC TGTNGTCTNT NTCNTNAGAA GATNNNANTC TCTGCACTGC 
CCTTTANGCC CACTCANNAN TNANNCAAAA NCCTATCTCT TATAANNAAA 
TGTCTGACAC TANAAAGTTC NTNCGGNGGA TCCCGANNAA NTCCGTAGAT 
GAGCAAATNA ANGATGANAT GTCGGCAAAA AAAACGCTAT TAGAAGAACA 
CACGCCACTA GTTGTGGATA AAGTTGTCTA CTTTTGACTC GTTGTGATTA 
TTATATTGCA CAATTATCAA CATTCNTAGT CTNATATGGG TATTGTTTTT 
GGNCTCCGTT ANATCTCAAA NCTTTNTCTT GGCGTCNCCA AAATNGGAAG 
AAAGANNAGT CANGTCACTC NNANANCTNA NACANNCTTT NGATNTNTCA 
GGANNNTTTT NNNGCCNNGA GATNTCCACT NNTGANTTCN AATTTCTNGG 
TAAANAANTT NNNNANNATG AGANNNGNGT NTNNTNNNNA ANNTGAANAN 
GNTNNNGCGG GCGTNTGNNG NNANGGGNCT CGNGGTTGNN NNNGGNATCG 
NNCTGNAGAC AGTGNTNNTG TGGNGATTTA NANNNNCATT TANAGANTNA 
AGCCTNCCGT TNCNCCGNGC TAGNGTTAGA GNGNNNGTAC NNNNGGNNNA 
NTGTNGNGNG TNNGGGGGNG ANTGCCCTGN AANNTNANGT NCGCCCCGAN 
ANCNGTANGG CGCNGCNGGG NGGNTGGGNN GTGTGGGNGC NCCAGNCNNG 
GGANNATANN ANGNANANA

AT1G04400.1

Model type: Protein coding
Short Description: cryptochrome 2
Curator Summary: Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description: cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04400.2

Model type: Protein coding
Short Description: cryptochrome 2
Curator Summary: Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description: cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link: InterPro Scan - TAIR