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Mutant Lines
11-4395-1

11-4395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 10315408 [Map]; Strand: w
- AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: intron4 (CDS)
Chromosome: 5; Position: 10340475 [Map]; Strand: c
- AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: intron2 (CDS)

ATCCTAGGCC TNTGCTATNA TTCTCTTGTC NGTTCCANAG ATTNGAACAA 
CACTTTTATC TTGGGACTAT TGTTTTCAGA ATTGAGTGCA AGTGTGGTTA 
AGTGCAAGTG TGGTTCATGT GGGTCAAGGA AGCAGTCACC AAGTGAATGG 
GAAAGGCATA CAGGCTGCAG AGCCAAAAAG TGGAAGTTTA GTGTAAGAGT 
GAAAGACACA ATGCTTACCT CTATAAAAAT GGGTACATCC GTTATGTGTT 
GGAATATTGA GAGAAAAGCA AAAACAGAGT AAGAGACATT TGTCTCAGAG 
ACATTTGTCT CTTTTCTTGT AAAGAAGACA AGAACAAAAC TTTGTTTTAT 
TAAAAATGAA ACTTGTTGTT TTACTCGACT AGATACACAC ACTTATGTAC 
AGGTCTTAGG TACATAACCG ACCAAACTAA ACATTGTGAC TGTTGAAACT 
AAGATAAACT GCCCAAACTA AAGTTACGAC TCTTACAACC ACCTTTTGCT 
ATAACATAGA AACTTAATAA TCAAATAACA TATTACCAAA CTCAATTATA 
AACTAACATT ATGCTTTAAC TCTCTCATAA ACAGGCCCTA ATATATACCC 
CCTGAATTTT CCATGCAAAT AAGATATTAC AGATTGTGTG CGTCCGAAAT 
TCAAACACAA GCCCAACANA GTGGTGTATT TGANNCTNAA TCTGCANCAG 
ATGATGGCTT ATATACC

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10315292 [Map]; Strand: w
  - AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: intron4 (CDS)
2. Chromosome: 5; Position: 10340591 [Map]; Strand: c
  - AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: 11-4395-1 - 3-prime edge
```
CCTAGGATAG AACGCAGAAT TGTCGTTTTC AGATATAAAA AAAAAATNTG 
CCNTTNCANA CTACAGTANT CGCNTCAGGC AGCTNAGNCC TGTCGTCTTT 
TNTGTAAACC TGTCCCAAAN AGGTNGNGTA AAGGATNTTT NGCAAATTAA 
ANAATTANCA NTANANCAGG GCAAATANTA AAANCNGGAA AACNCNTTTT 
TTCCAAAAAA CTAANGNGAN ANANCNTAAA ANGTTANCAN CNTNCTTGAN 
CNCTGANTT
```

AT5G28340.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28380.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR