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11-4399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1188146 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: intron1 (5UTR)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-4399-1 - 5-prime edge
    CCGAGAGATA TCCACTCTGA TTTGAGTTCT GGTAAAAAGT TTCCAGCTTT 
    TGATTTTTGT TTCTCTCAAT TGAATTTCTC TTGCTTGCTC TGTTTAAAAG
    GATTAGGATT AAATCGAATC TCTCTCTGTT ATGTTTTTTT GTAGATTATT
    TTGGATTTTA GGACTCAAAG ATTACAGATT TCTTATCAAT CATTCTCTGT
    TATTGTTNTA GAACTATTCT CTGGAGGAGG TTGAGGTCTG AAATCATGGA
    ACAACTTGGT TAGAGTGTGG AATTTTAGCT GATNANATCT TTGATTCATC
    TGTGATCATA ATAACTATGA AGATGGACAA AAAGACTATN GTTTGGTTTA
    NAAGAGACCT AAGGATTGAG GATAATCCTG CNTTANCAGC AGCTGCTCAC
    NAAGGATCTG NTNTTNCTGT CTTNNTTNGG NGTNCNGNNN GANANGGACA
    GNNTNNTCCT GGANNANCTT CAANAANGNG GCCTGANNNN NNNNCNGNGC
    TACTTTCNNN NCNCCNNGAN GGNTCTNCGN NGNGGGCNGN TGTGNTNNNN
    NCCCGTNGTC NGNGGGNNNG NGNAGNNGNA NNANNNNNCN GNGNNNGNGG
    NGNCNNNGNN NNNNNNGNNN ANACNANNNN NNGNNGNNNG NNCNTNTTNG
    NNGNNNCGNC NNCNNNGGCN NCCCGCGGGC CNCACAAAAC NGNCGAANNN
    NNNNNANAAG CGNACNNNCA AAAAN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1188253 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4399-1 - 3-prime edge
    TCNTGACCCG GCCGCGCNTA TTACCNGCCN CNGGGCGNCN ACCACTNCNG 
    NGCNGCTATA GNCNCTTNTT TCNTTNTATT CCAGGGTATG CAGAGTTGAA
    NATCTCAGAN ATNNNNCGGA GACCAANNAC AACTACGTCA TATGANAGTA
    TGAATGTTAA TAATTGTGCA ATATAATANT CACAACNANA CANAANTANA
    CAACTTTATN CNCAACTAGT GGNGGGTGTN CTTNTANTAN CGNNTTTNTT
    ACCGACATGN NATCTTTGNN TNGNTCATCT ACNATTNCCA TCTGGGATCA
    TNTNCNNAAN TCNNTGATGN AAAATATTTT NTTNTNATNA GANCGAATTC
    NGTGANAATG TTGAGTNNGC ANAAANNGCA CNNNAAGAGA CTNNAATANA
    NGTNAANANA AANAAAAANG CNTNTNGANN NATGTGGNNT GCNGACNGNG
    NTATNANNAN ANTNNNATNG ANGNACGTGA NCCNTNTNAG GAGAANCNNC
    CATNATAATA TAGAAAACAA TGNGGATNAA TNAGTNNNNG AANTNNGAGA
    NTCCACCNGC NCGCANNACC NNTNANNAGA GANANAGAGN GANNNNAAAT
    GATNNNGNCA CNNNANAAAN NGCGANCGTG NGAGGGANTT NNGNANTGAN
    GCGNTANGGG TTGNNNGGTG AGTNNNCAGT NNNNGNNNNC NGNNNTTNGN
    GTTNCNGNGC ACCNANGNNN NTGNNNCNNC GNNCGGGNNN AGNANNGTNC
    GCNNTNGCNA GNANTGTNNN TNTNGGTANA TGTTGAANG

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.2

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR