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11-4444-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16897151 [Map]; Strand: w
      • AT2G40460.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4444-1 - 5-prime edge 
    GGGNTAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GATGGCACCG TCGACCTCCA AGGCCGTCCC 
    GTCCTCGCCT CCAAGACCGG TCGTTGGAGA GCTTGCTCTT TCCTCCTCGG 
    TATATGTTTT CGCAAACCTC AGATAACTAT TTTCATCTAT AGATAACTTG 
    AAAAATATAA AAACATAAAT CTTTATGTAG TCTTTTGTGT CTTTATGTGT 
    GTGTGTGCGA GAAGGGTATG AAGCGTTTGA GAGGATGGCG TTTTATGGAA 
    TAGCGTCGAA CTTAGTGAAT TATTTGACTA AAAGACTTCA CGAAGATACG 
    ATCTCTTCGG TTAGAAATGT GAATAATTGG TCCGGTGCGG TTTGGATCAC 
    TCCCATAGCC GGAGCTTACA TCGCTGACTC ATACATCGGT CGCTTCTGGA 
    CTTTTACTGC CTCCTCTCTG ATCTACGTCC TGGTATTAAT TCTACAGTCT 
    CTTTTATTTC TTATGGTTAA AATACGAATT AAACTCAACT AAACCAGACT 
    TTTACAACTT TTTGAAGAAA TCGAACTTAG AAATGAACCA AACAAAATAT 
    ATTAATTTAA AAATAGTTCA AAAATCTGAA CTGGTGAAAT ATAATTATAC 
    GAAAATGATA TCAGTAATTA ATAAGAGCAG AGTCTACATT ATGTATGACC 
    TATTTTTTTT TNTTAAGCTA CCAGCCNGGG CCGTNNACCA CCGGGCCCCT 
    NNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16897132 [Map]; Strand: w
      • AT2G40460.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4444-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG ACAAGTTGCG TGTAAACTTT 
    TGCAGCCTCC ATTAATTGTT TTTTCTGTTT ATATCAAAAT TTTTTTTTTN 
    AAAAAATNGT TTTTTTATGG GATGTATTTG GTAATGTTGG GAAAGTTGAA 
    AAAGGTCAGG ACTGNNAAAA NANCGACTAA CCCGGAAATA ATTTAAGGTT 
    GCNTTGNGTT TTTTTTNAAN GGGATTTTNA NCAANCAAAN NGAAANCAAG 
    TNTNAAAAAT TNGCTNANTT AACCTNTNGC CTNNCNCNCC NNAATTNTGN 
    NATNTNTNNA AACCCCCCNC TAAATTTTTN GTTCCCTTTN NATNAANGNC 
    ATCATCANCN CNTNGGNCNT GTANCCCCCC CCATNNTCAT NATCAGTNNA 
    AANCCTNGGN NGGCATNTNC AATTTTTNAN TGGGNNCATN GTTTNTTNTA 
    GTTAAAATTN GGAAAAAAAT CCNNCAAAAG NCCTTTNTTT TTTNGNCCAA 
    AANTTNNGGN CANCANCNGG TNCCCNTNAN ACCANTTTTT GTCCCAANGA 
    NAAAANTCNC NCANTAAACC TNTGCCATCC TCTAAACANC AACAACAAAA 
    CCTTANTANC CCGTTTGGAA TTTAACCANA TTTTTTTCNA TTCTTTATCC 
    CGNNCTCNAN GCTNGAAAAA AAAANCGTTT TTTTTTTTNC NGNAAANNNG 
    GGNNNCCCNT TNNNTTNAAA NNTNCCCCCC CCCNTCNAAA AANCCCCNAN 
    AAAAAAAGGG CNNTTNAATT TTTTTA

AT2G40460.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 7555 Blast hits to 7238 proteins in 1401 species: Archae - 0; Bacteria - 3710; Metazoa - 634; Fungi - 431; Plants - 2228; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Link
InterPro Scan - TAIR