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Mutant Lines
11-4468-1

11-4468-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 4946471 [Map]; Strand: c
  - AT5G15230.2 - [+] show detail - GAST1 protein homolog 4
    Distance: 255; Region: intergenic
  - AT5G15240.1 - [+] show detail - Transmembrane amino acid transporter family protein
    Distance: -1196; Region: intergenic
Flanking Genome Sequence: 11-4468-1 - 5-prime edge
```
GGGATAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTCACTTGAA GTCTTGTATA AAAGAAGATT GCGGCAAAAA 
GCAATCGCGT TAGAACACGT GATTTTGTAA AAAGCT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 3989902 [Map]; Strand: w
- AT5G12330.1 - [+] show detail - Lateral root primordium (LRP) protein-related
  Distance: -496; Region: promoter
- AT5G12330.2 - [+] show detail - Lateral root primordium (LRP) protein-related
  Distance: -148; Region: promoter
- AT5G12330.4 - [+] show detail - Lateral root primordium (LRP) protein-related
  Distance: -69; Region: promoter
- AT5G12330.3 - [+] show detail - Lateral root primordium (LRP) protein-related
  Distance: -255; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGAAGCA 
AAGGAGAAGA AGGTATCATG TGCCATTTCC TTGAGCTATT ATTATAAAAT 
AAAATAAAAC TATAAAATAA AAAATAAAAT TAAACCAACA AAAATTCACT 
TGCCTTATTC TATCTTTCTG CAGTTGTCCA TGATGATAAT TAGAGAGAGA 
CAGGAACAAG ACGAAACAAT CTAGAACAAG AAACCAAAAC ATACACCACT 
TCTGTTTTTA AAGGTAAAAA AGATCAAGAA GAAACCAAAG AAAATCAGAC 
AGCAACAAGA AAAGATCAGT TTTTCAGAGA AGGAAAGTAG GAAACGGGTC 
AGATTGTTAG ATAGAGAGAG GAAGCGAAGA AAAAGAGTCG CAGTGTTCTT 
TTTCCACTGC GTGTGAGCAG AGATAGTGAC AGTAGATTTC GAAAAAATCT 
ATTTTGGATT TGTTTTTGTT TTTGGTTTTA TAGCAATTAG GATC

AT5G12330.1

Model type: Protein coding
Short Description: Lateral root primordium (LRP) protein-related
Curator Summary: A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational Description: LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G12330.2

Model type: Protein coding
Short Description: Lateral root primordium (LRP) protein-related
Curator Summary: A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational Description: LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G12330.3

Model type: Protein coding
Short Description: Lateral root primordium (LRP) protein-related
Curator Summary: A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational Description: LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G12330.4

Model type: Protein coding
Short Description: Lateral root primordium (LRP) protein-related
Curator Summary: A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational Description: LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2).
Link: InterPro Scan - TAIR

AT5G15230.2

Model type: Protein coding
Short Description: GAST1 protein homolog 4
Curator Summary: gibberellin-regulated (GASA4)
Computational Description: GAST1 protein homolog 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling pathway; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G74670.1); Has 474 Blast hits to 474 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G15240.1

Model type: Protein coding
Short Description: Transmembrane amino acid transporter family protein
Computational Description: Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G28960.1); Has 5045 Blast hits to 4985 proteins in 317 species: Archae - 15; Bacteria - 153; Metazoa - 1796; Fungi - 1055; Plants - 1275; Viruses - 9; Other Eukaryotes - 742 (source: NCBI BLink).
Link: InterPro Scan - TAIR