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11-4499-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19540550 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon2 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4499-1 - 5-prime edge
    GTGGTGGGAA CATTGAACAT GTTGGGACTA GCGAAGAGAG TGGGAGCAAG 
    ATTCTTGCTG ACGAGTACGA GTGAGGTCTA TGGAGATCCT CTTCAACATC
    CTCAGGTTGA GACTTACTGG GGCAACNGTT AATCCCATCG GTACTACCCC
    TTCATCTCCC TCTCTGTTTC TTCTTCTTCT TCCTCATTTT GAAACAACAA
    TTAAGCGCAC GTTAGCAGAA GAAACACAGA GAGAGAGAGT TCTTTTTTAA
    GATCTGGTCA AAGTTCCTTC CATTTGAAGC GTAGATTGTG GGTCCTTTAA
    TCGTACGGCT CTCAGACGTG TGTCTCTTTC ATAGACGCAC CCGCAGGAGA
    TATTTTTATC CTCCTTATTT GACGCTTTTA CCCCCCTTCC CACATTTTAA
    TCAAATTTTC TTCTTTCTGA AATAATAGAT TGAGCAATTT GTGTTTGGTG
    GAATATTGAA AGAGTAGTGA TATGGCAAAT TGGAACAGGT GTTCGGAGTT
    GTTACGACGA AGGCAAACGT ACGGCTGAGA CTTTGACCAT GGACTATCAC
    AGAGGCGCTA ATGTTGAGGT CTGTTTTCTT TTTCATTATA TTTCGCTGCT
    AGAAAATGCA GATGCAGATT TTTGACTGAT TTATTATTCC TCAACAGGTT
    ANGATTGCTA GGATATTCAA CACTTATGGC CCAAGGATGT GTNTCGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19540666 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: intron1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-4499-1 - 3-prime edge
    CCCACCACAT TCGTCTTGTA TCCACACACA CAGAGTTAAG GACAAGAGCA 
    AGCAAGATCC ATACTACATA TAACAACATT GATGATGATA AACTGAAATT
    CCTATAGAAG GAAAAGAAAA AGGATATGAT AGTCTTGACG GGATTGAATT
    TGTAGTGAAC AGGAGAAGCA GGGCATGCCA AATGGTAGAT CTGATCAACC
    TCTAGAAGGA TCGGCTCCAC TACATCGTGA CGGATCATCT CGAAATTAGG
    GTTATTGAAA TGGTGCATCA CGTTCTCTTT CCTTCCCGTG AAGAAATTGT
    CGACCACGAT CACGTTGTCT CCTCGAGCCA TCAACCGGTC CACCAGGTGT
    GACCCGACGA ACCCTGCTCC ACCTGTCACA ACAACCCTTA GCACTTTCCG
    TTTCAAGCT

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR