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11-4502-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6354993 [Map]; Strand: c
      • AT3G18500.3 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron11 (CDS)
      • AT3G18500.2 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron11 (CDS)
      • AT3G18500.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron10 (CDS)
      • AT3G18510.1 - [+] show detail - unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; B...
        Distance: -671; Region: promoter
    Flanking Genome Sequence: 11-4502-1 - 5-prime edge 
    AACCAGACCA CACATGTGTT TCTAATTAGT TACTTCATCA GCCAAATATT 
    AAATTTGTCC ATTTGAGTTT TGGTTGTGTT TAGAATGTTT TACCAGAGAT 
    AATCAACCGT TCCGAGAAAT TTCGAGTGAT ATGAGGTTGC TAGAGGTTCA 
    CCAACAGAGT CCCTGGTATT TGCTGAGCCC TGTTGTGTAC CATGTTCATG 
    AGCATATTTA AGGTCTTGTC ATATATAGAC AGGGACATTA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6355109 [Map]; Strand: c
      • AT3G18500.3 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon12 (CDS)
      • AT3G18500.2 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon12 (CDS)
      • AT3G18500.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon11 (CDS)
      • AT3G18510.1 - [+] show detail - unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; B...
        Distance: -555; Region: promoter
    Flanking Genome Sequence: 11-4502-1 - 3-prime edge 
    GTCTGGTTAA GGTACTCTGA TGGTCTTTTA CCTGCAAGAG TTCTTGACAC 
    ACTTCCTATT GATGTTCTAT GCAAAACCAA AGGCCTTCCT TGTCAAGTAT 
    GTCTTTCTAT CAAACAGTTT AGATTTGGTG AGGTCATTTC TATGATTGAT 
    GCNTTGAAGC CTTATTCGTC TTTGGTTTGC AGGAATTGGG AAGCGATCAC 
    TTGGCTCTTG TTTCTGAATT TGTCTTTGAA CCGGACGGTT AAAGGCATCT 
    AGTGCCAGCT TAGTTTTCTT TGAACCGAAC CGTTATAAAT GTGTTTTTAT 
    TATATGTATA AGCGTACCGA AATTACCTGA TCATGGTTCT ATATCAAACC 
    GACTTCTCGA TAAATAAATA AAAATTGAGA CGATCAGAAG CT

AT3G18500.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1180 Blast hits to 1142 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 213; Plants - 283; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18500.2

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1375 Blast hits to 1335 proteins in 238 species: Archae - 0; Bacteria - 71; Metazoa - 526; Fungi - 233; Plants - 309; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18500.3

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1).
Link
InterPro Scan - TAIR

AT3G18510.1

Model type
Protein coding
Computational Description
unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR