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11-4509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1147718 [Map]; Strand: w
      • AT1G04290.1 - [+] show detail - Thioesterase superfamily protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G04295.1 - [+] show detail - other RNA
        Distance: -63; Region: promoter
    Flanking Genome Sequence: 11-4509-1 - 5-prime edge 
    CAAATGGGAC AAAGACTAAA AACACCTTGA TGTTGTTTAT TGAATGTAAA 
    AAAGAAGAAA GGTTGGTTGA ACGATCAAAG GTTGGAACGA GGAGCAAAGT 
    ACTTGGTATG ACGACCTTGA GCAATAATCT TACCAGTCGT NTTCTTCCTC 
    AGCTCCACAC TCACTACTGC TACAGCTTTA CCAACACGCA ATGCCTTTGA 
    TTCTATCTCT ATCTCTTCCT GTGTTTTTTT TTATATATAT GTCAATCAAT 
    TTTGCAAANA AAGACATCTA ATAAATTTAA NAAAGAAGGA AAGGAAGTTA 
    CATCGAGAAA AGCAGCATCA AGGTATGAAA CATTGATCTC CACTGAAACT 
    CCGGAATGTG AAGCTCCGGC TGTGTANATC ACTGCTGATC CTATCAAATC 
    CACCAGCGTC GCCGTTGCTC CTCCGTGTAA NAATTTCCCT GCGTTCTTTC 
    CTCAACAAAT TCACAAAAGT CATTAGGGAT TCTTTTTTTC TCNAAATTAG 
    GGATTTGTTG TTCATGTGGT TGTTACCAGG AGATGAGGAG GGATTTTCAT 
    GGAGCAGACG ATACGGCCAG GTTCGATGAN ATCCACTTTA ANACCATTGG 
    TTACGAATCG TTCGAGGAAT CTATGTGGGA ATTTCNCCAC CATTGGTTCC 
    TTGGCCTTTT CGTNTTCATN NNCCTTCCAA AAACTTTTTT NNCCNAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1147649 [Map]; Strand: w
      • AT1G04280.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -995; Region: promoter
      • AT1G04290.1 - [+] show detail - Thioesterase superfamily protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G04295.1 - [+] show detail - other RNA
        Distance: -132; Region: promoter
    Flanking Genome Sequence: 11-4509-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATTTGCTTCT TATTATTATT GATACTAATA AAACTACATT ACTATATGTT 
    TTTCTAATAA TACAAACAAC CTTACTTTTT CTCTATATGT GTTTACCTCG 
    ATGTTGAACT AAGCT

AT1G04280.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2); Has 195 Blast hits to 194 proteins in 47 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 3; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04290.1

Model type
Protein coding
Short Description
Thioesterase superfamily protein
Computational Description
Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04295.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G04290
Link
InterPro Scan - TAIR