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Mutant Lines
11-4578-1

11-4578-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 2264828 [Map]; Strand: w
- AT4G04540.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 39
  Distance: 2690; Region: intergenic
- AT4G04545.1 - [+] show detail - transposable element gene
  Distance: -5783; Region: intergenic

TCGTTTCTAT TTTCGAAGGT AGTCTTGTGA GTCTGTTCCA ATAGTTCCTT 
CTTCTTTATA AACTCCTTGT AATCTCTTAT GAGAACTCAT CTATCTTTTT 
ATCAAAAACT CTCTCTTAAA AATAGATCAT GTATCCGTTT TCGTATGTCG 
AATTTTGATC TTTCTCGACT TATCAAAAGG CTTTTCCGCA TCCTTTTGTG 
GCGTCATTCA ATCCATCATC TCGTCTTTGA GTCGTGTGTC GTCTCCATTT 
CGAGAATATC CACTCCAGAT CTTTGAAGTG CCGAAATTAG GATTGATTCC 
TCACCATGAT CATATCAATA GCAAACAAAA TTGTTCTACA TCTTTTTTTT 
TGGGTCAAAT GTTCTACTAC ATTTAAATAC CTTTTTTATA ACAACATTTA 
AATAGCTCTT TTGGNGACTN ATTTGNGCTT CAAAGCAAGC TTGTTGGAAA 
ACCCGTTCGC GGACTTGATT AATNGNTCTT TGTTGCNCAA AAANAATGGN 
TTCATTTTNG NAATTTNCTA ATNGTTNCAA AGNTTTATAA GTNGAATTAA 
TCAAATTCAA TTTTTTCTCG TTCGATTTCA GAGTNTCCAT TCACGCGAAA 
ACTTATCCGC TTCCGTTTCN ACGTTACNCA AGCGCGCCCG GGCATTTTNT 
AATNGNNGAA TAACTCCCTN GACGCAGTTC TTC

3 prime edge [+] show sequence

Chromosome: 1; Position: 864560 [Map]; Strand: w
- AT1G03457.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -435; Region: promoter
- AT1G03457.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -485; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TGACAAACGA TATCCAACAT AAACAAAATA CTCACTTTTC TTTAAACCAA 
ACGACAATAA AAATCCAAAA AAAAACTAAA CATAAACTAA CATTTTGAGT 
TTTAATGCAG AAGACTGAAG AAATGACAGC CTATTTAATT TAAACATAAA 
CAAAAAAAAT AGCCAGCTTA TTCACACACT CCATATTAAA AACAAAAACG 
CGGATAAAAT GGTAAATTCG GCATGACAAC CCCATCCATA ATCAGACAAA 
ACAATCCGAA AGNGTTCCCC TGGCNTCCCA CAGGCTCGCC TTCTTGTTTA 
ATTGAACAGC TGTTTTAATG GCAATATCGT AAATTTAGTA ATAACGACNA 
GCCCANATTT AGTCCGTNTT TTAATTTAAC CACTTTGTCA CCCATTAGTT 
AGTAGTTCTC TCATTTTTTC TCTNATNATN ATNATTTTTT TCCAAAAAAA 
ANAANGTAAN TAANTAANTT TTCNGGAANA AAAANCCTGT ANAGAGAGAA 
GAAGAAGANG ANGANGANGA NGANGANGAN GANGAAAGGA GNGAGAACCN 
NTGGCGGAGG ANACGATGGA NAACNAAAAG AGGGNGAAGT TGTTCGTCGG 
ACAAGTTCCG AANCACATGA CGGAGATNCA NCTCCTCACA TTGTTTGNAN 
AATAACCAGC CGGGGCCGNC GACCCNNNGN NNNTNTT

AT1G03457.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1); Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14; Bacteria - 1483; Metazoa - 15787; Fungi - 3162; Plants - 5005; Viruses - 0; Other Eukaryotes - 3008 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G03457.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G04540.1

Model type: Protein coding
Short Description: cysteine-rich RLK (RECEPTOR-like protein kinase) 39
Curator Summary: Encodes a cysteine-rich receptor-like protein kinase.
Computational Description: cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (CRK39); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (TAIR:AT4G04570.1); Has 125664 Blast hits to 124100 proteins in 4695 species: Archae - 110; Bacteria - 14484; Metazoa - 46060; Fungi - 11047; Plants - 34830; Viruses - 446; Other Eukaryotes - 18687 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G04545.1

Model type: Transposable element gene
Short Description: transposable element gene
Computational Description: similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G09170.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34610.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
Link: InterPro Scan - TAIR