Home
Mutant Lines
11-4668-1

11-4668-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1238393 [Map]; Strand: w
  - AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 11-4668-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTACTGACAT 
TGCGATGATG TTGGATCTCA TAGGAGTTGA TCCAACTCCG TTAGATCTCA 
TCGGAGTAGA TGCGATGATG TTTGATCTCA ATGGTGTTCC GTGCTTCGAT 
AAGTACGGGG AAGCTCGGCC ACGATCGTAA GCT
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 1238465 [Map]; Strand: w
- AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

TTATGTCACC GATGCATCCC AACATGGTTG GATCGACTCC AATGCGAACT 
CCTATGCGGT CTAACATGGT TGGTTCGACT CCAATGAGAT CAAACATCGT 
CGGATCAACC CCGATCCGAT CAAACTACAT GGCTACACCG ATGAGAACTC 
ATCACGATTT TGGTACACCA GTGAGGAATT TAGCTGGAAG ACGAATCTTA 
ACTGAATCGG AGTTAGGACC ATCGCCATCT GAAGTGGCTG ACAAATTGGC 
GAAAGATAGA TCGCACGAAA CGGAAAGTTC AATACTCAGC GAATGGAGCA 
TCGATGAATC TAGCATCGAA GGATTGCGAT CAAAACTCGA GAGATGGCGA 
ACAGAGCTTC CACCGTTGTA CGACATAGGA TCAAGCCATA TAAGTAGCAC 
TGATTACGAT GGCGCGAGCG TTCCAGCTGC AACTGCCGGG GGAGGAATGA 
GTTCAAGACG GAAAACTCCG ACGACGAAAA AGCATAACCG CCGTCACACA 
GATGGAGGTA ATGGACTTTT CTCGTGTTTT AGTAAGATTT GTGGTGTGGA 
ATGCAGTTTC GTATGCGGTG GTGGTGGTGG GCCGATGGTC TCAGAAGGAT 
CTACTAAGAA AGGTGGAGCC GGACGTGTGC AACGCACATA TTCCGCTGAC 
GATCTGAGCT TTGTGTGATC TTTATTTTAT TGGTCTTATA TTAACTTTTA 
TTTTTT

AT1G04540.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link: InterPro Scan - TAIR