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11-4678-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 847954 [Map]; Strand: w
      • AT1G03410.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -271; Region: promoter
      • AT1G03430.1 - [+] show detail - histidine-containing phosphotransfer factor 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4678-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT TACACAGACT GTGTCGCTCC 
    GATTTTGAAT TTGGAATCTC TTAGTTAAGT TGGAAGTTTG TTCTTTGGTC 
    TTTTCGCCTA GTTGTTGTTG GATCTGTTTT AAATTAAGCC AAAAACCTCC 
    GATTAGATCG ATCTCGGAAC CGTCGAAATA CAGTTCACCG TATCCGTTGT 
    TTGTTTTTGG TATATGTATG TTTGAGAAGC TCTTACCATC TTTGTTTACA 
    AGTCTGGTTC TTGGTAAACT TTAGCTATGA ACACCATCGT CGTTGCTCAG 
    TTGCAGAGAC AATTTCAAGA CTACATCGTT TCTCTTTATC AACAGGTTCG 
    TTCCTAACCA AACTTTTCTT ACTTTGGCTG GATTCTCACT TTTGGGCTTA 
    GATAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 847919 [Map]; Strand: w
      • AT1G03410.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -236; Region: promoter
      • AT1G03430.1 - [+] show detail - histidine-containing phosphotransfer factor 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4678-1 - 3-prime edge 
    NTGACAACCG CNGAGGTATT TTACCGACCG TTACCGACCG TTTTCANACC 
    TAGAGAGATG ATGATGAATC TGATCGGAGC GTCGAAAGTT ATNATTTATT 
    CCACGTTCCG TTGACTGATT TTGACTTAAA TATCAAATGG AGGGTTATNT 
    TTGTAAATGA CTATATTGTA GGAATTAATC AAGTACGTAA ATAATATTTT 
    AGTTTGTGGG GTGCAAATCT GATTTTATAG ATAGGGAAGT TGCTAGCATG 
    CGTTCTCCAC AAACGAGATA TCTTTTTTTT TTTTTTTTAA AAAAAANGGN 
    CCNCCCCCNN GGGGCCTTGG CCCCNGAATN NAANNCNNCC CCNNNTNCAA 
    AACGNNAAAA TCCCNGNCCC CGGAANATAA AACCCNGNGG GGNNTTNGGN 
    CNTGGNNNCG GGGGCCNAAA ANNNNTNTTN NTNANCCGGG NTTTNCNGGN 
    CCCNNTNCTT TNCNCCCCNA CCCCNGGAAN ANANNTTTNG NCNANNNTTT 
    NCNATCCNNN CNCNAAATTN TTTNNCCNNA GNAGGGGCCG NCCNTTNNTN 
    NAACCCTACN GNANAAACCN NNANTTNCNA CNCCTNNCCC CCCCCCNCTT 
    TGGGNNGNNC CCCCNNCCCC GNNANANNNC CACCCNNGNT NCAAGCGNTN 
    NNGNCCCCTN AACCNNTTAN NTNTGNGAAA NTTTNTNCCC NAANCNNNAN 
    NACCCTNTAN NNTNNGNGTN GNTGGAGANC NAAAAANNGG GNNNTTNANA 
    NGGGGGNNNG NGCNCATANA CCCTCTCTNA CANCGGGNGC CCNNNTACNN 
    TCTTNTTATN T

AT1G03410.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1); Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0; Bacteria - 1128; Metazoa - 114; Fungi - 883; Plants - 4883; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03430.1

Model type
Protein coding
Short Description
histidine-containing phosphotransfer factor 5
Curator Summary
Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine-containing phosphotransfer factor 5 (AHP5); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1); Has 311 Blast hits to 310 proteins in 49 species: Archae - 2; Bacteria - 33; Metazoa - 0; Fungi - 8; Plants - 266; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR