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11-4702-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1692050 [Map]; Strand: w
      • AT1G05650.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4702-1 - 5-prime edge 
    CCTTTAGGAA TGCTGCTGTG GAATCGGTGA CTCCGTCTGG TTTGGCCCCG 
    AAGCTCACGA CGTTGAAAAC AATGGAGGCG CTGCTCGAGA CATCGATGAA 
    GGTGAGAAGT GTGAAGATAA GTGGAAATGT TATAGCCTGA TTTTGTCATT 
    TTTTATATGT GAGTTTGAGT TTATGTTTGT GTTTGTGTTT GAATTGATTT 
    GATTTGATGC ATGGGTATAT ATAGGGAGAG AGAGCATAAT TATTTGGTTC 
    GTTATTGGAG TCTATGGTAC AATTAAGTAC ATGTGATATC TATATGATAA 
    GAGGTTGTGA ATATTTTATG ATTGATAAAA GAGTTTACAT TTCTAATCAT 
    TAGGTGCACA CATGGTTGAT ATCGTACTTT TAGGAGCAAC GGTCGTTGTA 
    TGAACGATGA CATTTTTGCA CATTATCAAT TTCCCATATA ACATGGGCCA 
    TATACGTATG TGTATATGTA TTATATTCTT GGTACATGTT GTTTTTATAT 
    ATTGATGAAC AAAATAAATA CGTGGAAACC CACTCAGCGA TTGATTAGAA 
    CATAAACCGT ATATAACGTT AATTCTATAG AGAACCAACA ATACTAAATG 
    AAGAAAACTA TCATTTGTGC ATAAATAGAA ACTCANCCNT AAACTAANAG 
    AAAGAAACTC AACCAAAACC CCTATNNAGT GCANAGTTGA TTTTTTTTTT 
    TTTTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1691956 [Map]; Strand: w
      • AT1G05650.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4702-1 - 3-prime edge 
    TTTATATGTN CNAGATGNNA TCTTCCGTCC GNGTCCAAGA GANGTNCAAA 
    TGGATGTCTG ATCTANGAAT TACCANCCCG GGCCGTAAAC CACGCNTGCC 
    CTATATAACG TNTGGAGGGC CATGCANGAG CAAAATCACA TTTCANGTGA 
    CCGGAACCGT CCTTGNTCCG GAAGATTACA GGACCTTNGG CAATTCCGGT 
    TCCTGGATTC TCTTCAACAA GGTTAACAGA TTCTCACTGG TCGGTGGGAC 
    TTTTGACGCT CGAGGTANTG GGTTCTGGTC TTGCCGGAAA TCTGGCCANA 
    ATTGTCCTCC CGGTGTTAGG GTACATATGC TTNTCCTCTA TCTATAGTTA 
    TTGTAAATAA AAACAACAAT NTGACATTNA TACATAAGCG CCACCAGAAT 
    GCAAAAGAGC AACAAATAGC TTTAATCATT ATTGATTAGT AATAACTAAA 
    TAAGTCAATA TTNTTTTTTT AATAGTCANG GTAACATATC TTTATTCCAA 
    NCTTTAANTC NCGATTANAA AAAANAGGAN TNACNTNNAT NGTTTNAAAC 
    NATATCNTAN TNCNGGGNNN ATTTTAANNT NNAGNNCNGA GANCTTCCGN 
    ANNCCATTTT TTAGNNNTTC ATTTTATTAG CCNNNNNNGT NCCNATTTTA 
    NAATGATNTT NNGGNAAGGG AANNNGGNTA TTTTTNNGAA AAANNATNNN 
    NGNNNTTTTT ANNNTNTNTN TNAATANNTT TGGGTTNTNA ATAAANNATG 
    CTGNNGTAAN ATTGAGACAA TNNNNAAAAG AAANAGANCT NANAN

AT1G05650.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink).
Link
InterPro Scan - TAIR