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11-4730-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 350761 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 582; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 2696; Region: intergenic
    Flanking Genome Sequence: 11-4730-1 - 5-prime edge 
    NCCAATTTAC ATTTNTGCCC ACCAATAACT TTTGTATACA GATCNATTGG 
    TTTNGTANNA NATGGGCATA GTTCGGNNTG ATGCTANNGG ACGNGAATTA 
    CCAGCCCAGG GCTGNGGACC NNTCNTGCCC ATATATCAAG TNATATANAC 
    TAGTTAGTTG TGAAGATGCG AGAGTNAACA CATNCGCTTT GAGGACATGG 
    AGATGTAGTG GAGAACTCAA CACGTGATTG GCACGAACTA ANAGGTGGTT 
    GCTGAATNGG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9003165 [Map]; Strand: c
      • AT3G24660.1 - [+] show detail - transmembrane kinase-like 1
        Distance: -411; Region: promoter
    Flanking Genome Sequence: 11-4730-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATC 
    TACGGTCAAG ATTCAAGGAG CATGAAACAT CCCATGAACC AAATTACACA 
    AAAACTTTTA CCTTGATAAA AAAACATCAT TTTATTATTT TGGCAGAAGA 
    AAAAGTCTTA ATTCGAACTT TGAGCGTGCT TATAGTTTAA TCAATTAAAG 
    TTATAAAGAA AAGTAACTTT ATAAATTCAG GAGTAATCAG TAGATTTATA 
    CCATTCTTGT CCATCGCTTT AAGCCACACT TGATCGGACG GTAAACAATC 
    AATCCGGTTT ACACTTTCTG ATTATAAAGA TTCCAACTTT TGCTTAAATC 
    TGACGGTTAA TAATCAATAC GGTTTGATTT TAAATCATAG CCGTTGAGAT 
    GTTTGACTTA AGTGTTTACA AAGTAGTCAA CACTCTCTTT CTGCTACAAA 
    GGACCAGTCT TGAAACTCAA AGTCCTTACC TTTCCCTTCT CTAACCTCTC 
    TTTCTCTTTC TCTGTCTCTT TGTGAGAAAT GGGCATGGAA GCT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01818.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT3G60670.1); Has 397 Blast hits to 397 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G24660.1

Model type
Protein coding
Short Description
transmembrane kinase-like 1
Curator Summary
member of Receptor kinase-like protein family
Computational Description
transmembrane kinase-like 1 (TMKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: inflorescence meristem receptor-like kinase 2 (TAIR:AT3G51740.1); Has 102882 Blast hits to 72978 proteins in 2721 species: Archae - 76; Bacteria - 8021; Metazoa - 22133; Fungi - 3923; Plants - 58593; Viruses - 201; Other Eukaryotes - 9935 (source: NCBI BLink).
Link
InterPro Scan - TAIR