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Mutant Lines
11-4763-1

11-4763-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2356794 [Map]; Strand: w
- AT3G07360.2 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)
- AT3G07360.3 - [+] show detail - plant U-box 9
  Distance: 0; Region: intron2 (3UTR)
- AT3G07360.1 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)

GGNTATNGGT TTTCGTATGT GAGATGTAAG TAGAAATCTG NGTGAATAGT 
TTTTGCAGTT TGATGCTCCT GGAGAAATCA ATCAATAAAA TCANTGTNGG 
NGGCTNTATT CANCTGCGAA AGCCTNGGTC AACAAGTAAC AGNGTGTACC 
NTNTNCNTCT GNNTNTGTGT ATAAATAAGN AGATTATNAA AAATACNTAG 
AAAGGCTGNC ATGTCGAGTN CCTCACATCA CTGATAAACC ACAAAGCAAA 
TCAANCTAAT TCCACTCTCT CTGGAAAAAN AGTTTATTAC AGAGTCACNA 
GTTTTCCATT GATGTGATTT TTTCTCTATG TAATGTAACG TGACGATGCN 
GATTCCTATT GTCGTGTTAG AAAAAAACAG TACTTTTAAG TTTATGAATA 
TATAAATAAN TACTCATCAC AGCT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 2356678 [Map]; Strand: w
  - AT3G07360.2 - [+] show detail - plant U-box 9
    Distance: 0; Region: exon2 (3UTR)
  - AT3G07360.3 - [+] show detail - plant U-box 9
    Distance: 0; Region: exon2 (3UTR)
  - AT3G07360.1 - [+] show detail - plant U-box 9
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: 11-4763-1 - 3-prime edge
```
CAATAACCAT TCAGATCCTA AAGATATGAA TAATTTACAA AAATTCTTAC 
AGCCAAATAA AGTAAAAAAA AGAAACAAGA TTTTAGGTAA TTTACATTGC 
AGATTTCAAG GCTTTTCTCA GGCTGTATGA GTGAGATTCA TAGCTTTTCT 
CAGTCTGTCC AATATCCCAT TTGCTTTCCT CTGCGCCCTT GAAGTTCCTT 
CACGCGAAAG CT
```

AT3G07360.1

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description: plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.2

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.3

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR