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11-4779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19728554 [Map]; Strand: w
      • AT3G53230.1 - [+] show detail - ATPase, AAA-type, CDC48 protein
        Distance: 1882; Region: intergenic
      • AT3G53232.1 - [+] show detail - ROTUNDIFOLIA like 1
        Distance: 2424; Region: intergenic
    Flanking Genome Sequence: 11-4779-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TATGTCAGAG AGATGCACGT GTTCTCTCTT 
    CTTTTCCAAC CCCAACGGGT CCCAAATCCC TTTTCTTAGC TTTTTCCTTG 
    CTTGAGTCCA ATCGGCTTTT GCAATCCAAT GAATAATGAT CTTTCTCTTT 
    TATTATTTTA AATTTTGTAA TTAAGGCTAG AAGTCTAAAT TAGTCCCAAA 
    CATTACCCAT GTGACTAATG TGGCAATGTC TTACTTAAGA TATTTCTATT 
    GTTATCTGTT TTTTTTTCTA ATGTTATATG TTAGTAATGN GAATATGACA 
    ATATGTGATA TGAATTGCAA AACACCACAC TGATCTGACG TATATATCTT 
    CCTCTTTTCT CCCTATTTTC GTAGTAACGT CCAAAGGAAT AANAAGCAAA 
    ACAACAAAAC TCTCCACCGA TTCACAGTTA GNGGAATACA ACACAATAAA 
    ATAGTAGAGT TAAGGAATT

AT3G53230.1

Model type
Protein coding
Short Description
ATPase, AAA-type, CDC48 protein
Computational Description
ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G53232.1

Model type
Protein coding
Short Description
ROTUNDIFOLIA like 1
Computational Description
ROTUNDIFOLIA like 1 (RTFL1); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: DVL family protein (TAIR:AT2G36985.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR