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11-4789-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 621155 [Map]; Strand: w
      • AT1G02813.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT1G02816.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -306; Region: promoter
    Flanking Genome Sequence: 11-4789-1 - 5-prime edge 
    CTCCGAGGTG TCTCGTGACG GCGACGACGT CGAGTTCTTC GTTGGTGCTG 
    CTTCGGAGGA GTTCTCGAGC AAGTATTTCG TGGACAGCCC AAAGTGTGGT 
    TGTGGGTTTA ATTGTTATAG GCCTATCTCT TCCTCTTAAA GCCCATGGGC 
    CTTAAAGCTG TTATGATTAT AATATATAAA ATAAACACGG CCTCGAAGCT 
    GTTATGATTT ATGAATATAT AAAAATAAAC ACTACTGTTG GTTTAAGCCC 
    AAAATTAGCC CATGTGAAGA ATTTTGTTTG TTTTGAAACA AAATGACAAA 
    AAGACACCTC ATGGGCTTAC TGATGACACG TGTCGAGTTG TTCGGTTAAA 
    ACGATGTCGT GTTTATGGTC GCTTGATCTG ATCAGATGTG CCAGCTATAC 
    AAAAGTCTCT CACGTCTCTC CCANAAAACT CTTATTTTAT CGCCGAGAAA 
    GTGACGGAAA ACGAAATCCA AACGGGATAA TAAACCTAAA ACCTAAATTA 
    GTGATTTAGC TACGACTCCT AAAGATTCAA ATTTGGGTTA CATCGGACGA 
    ATCATGACTC TGCTTCCGAT TTCAATCTTC TTCTTCTTTT TATTTTGCAT 
    TCCTTCCCAT TAATCNCCNC CGCTACGATG ACNATATACC GACGGCGTAC 
    ACTNTCCTNN AAANCTCAAC TTTNCCNTNN GGANTNTTCC TAAAGGAGNG 
    GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 621039 [Map]; Strand: w
      • AT1G02813.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT1G02816.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -422; Region: promoter
    Flanking Genome Sequence: 11-4789-1 - 3-prime edge 
    CCTNGGANAT GTCGATCCAN ANGANAAGAN CTTTGACGCT CNCGCCTATC 
    ANCCTTATGA CCCNTCCTNT NGTTATGATN CCGGAGATTA CTGGGTNTGG 
    CTTGTGACCT TGGACTANTC TATGGAGAAC TGACATGTGG TGNNNAAACG 
    GACTTTGAAA ACGCCAGTTC TTCNGTTTAG GTCGTAGTCG TGGACACCTT 
    CTGGTAATAT TCCTCGTGGT AAGGTGTAGT TTTCGAGAAC CTGGTAGACA 
    CNTTCGCTTT TTTTGGCCGG AGACGGATAC AGAAGTAGAG AGAAGAAGGA 
    GGAAGATGAT GAAAATGGAC ATTGTTTCTG TTTTAACTTA TCTCTGTGTT 
    TTTGCTTAGT TTAGTGTCTA ATCTAATCGT AAGAATTTTC CTTGAATCTG 
    TTTAANAAGT TGGTTTTGGG ATGTCTTTGT GTGTTTANTT NTAAGTNNAG 
    AACGATGAGG GATTANTTGG GGTTTANTGA CNCTGNGATC NGNCCNNGAA 
    AGGAATGAAC NGNTGANATN TGTNANCNNA TGCTNNCNGN NNNANANNGG 
    ANCNTNA

AT1G02813.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, cauline leaf, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 501 Blast hits to 500 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 500; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02816.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR