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11-4802-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28867645 [Map]; Strand: c
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G76878.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-4802-1 - 5-prime edge 
    ATTGCTGCTC TGGTTGGACC ATCAAGGGAA CAGAATTATC CGGTTTAACA 
    AGACCGGAAG ATGAAGAAGA AGCTGCAATG TTGTTGTTGC TGTGGAATTT 
    GTTCCTCTCT CTATATAAAG CATCAAGCNT GGTGAAAGTA AGGGCAAGTC 
    TTGGAATCTT CGGGACGTTT CTTGTTGCTC TCTTTGACTT TCTTGAAGTA 
    TTTGTTTATG TTTTCCCATT TCTCTTTGCA TCTCTTTGAG TTCCTGTTGA 
    ATCCTAACCT TCTCATTCCC GCTGATATCT CTTCCCACAA TGGTCCTTTT 
    GGTCCGTTTT CTTGATATTT CGAATCAAGA TTCGTCCTCA GCTTTATCAA 
    TGCTTCTATC TCCACTTTCG GCCACCGCGA CGAGCTCGCT GAAGCTGCAG 
    GAGTCATATT CTGATCACCA CCATTGTCCG TTTTCGTTGT GTCTAACGTC 
    GACACAACCG CTTGAATTGG CTGCGGAAGC GGAGCAGGAG GTTGCGGTGG 
    AGGAGACCGT TGAGGCGGTT GCTGCTGATT GTTGTTATTA AGCTGCATTG 
    ATGGTCGAAC TTGTTGCGGC TGAGGCTGCG GTTGTGGCTG ATTCGGTTGT 
    TTCTCTGACA GTTTTTGAAG AAAGGCCATA ACAGCAGCGT CTTTTGCAGC 
    GGACATAAAG CGTTCTTGAG CTAANATCTC GTGCTCGCGG GTTGAT

AT1G76878.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G76880
Link
InterPro Scan - TAIR

AT1G76880.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 4096 Blast hits to 3293 proteins in 319 species: Archae - 0; Bacteria - 232; Metazoa - 1014; Fungi - 378; Plants - 799; Viruses - 55; Other Eukaryotes - 1618 (source: NCBI BLink).
Link
InterPro Scan - TAIR