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11-4815-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 382262 [Map]; Strand: w
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: -807; Region: promoter
      • AT4G00895.1 - [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4815-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT GAATTTGGTA AACACTTGAA GGGCTTGGTC 
    AAGATGTTGA TTACAAGAGG TAAATCTGGG ATTCTGGTTG ATGTTTTAAT 
    GGAATTTGAG AGAATCTGTA ATGAATTGGT CTCAACAAAA CTTGTCTGGG 
    TTTCTTGATG ATACAAAAGA TTATATCTAA TCCAAAGTTT GCTTCTTTAA 
    GAAATGTTAC ACTACTTGTC TAAGTCTTTG GTTGATGTTT TAATGGAATC 
    TGAGAGAATC TGTAATAAAT TATTTGTATG TGTTTCTTGA TGAAACAAAA 
    GATTGTAAAA GAGATTATAT CAAATCCAAA GTTTGATTTA GCTTCCACAA 
    AGAATTAAAA AGCAATAACA GGTTACTACT GTCTTGTTGA GGTTTCTTAA 
    TGAAACAAAA GATTGTAAGA AAAAAAGTTA CTGTCTTTTG TCTTTTGTGT 
    TGATCANACT TTTACATTGT CTTGATCTTC TTCTTGATTC TTGTCCTTCT 
    GCATCTCCCT ATGAACTTGA GAGCTTCATC GATTAGAATC ACAGGGAAGG 
    AAACAAGAAT AACCACAAAC CATTCCCTGA AACTCAAAGG CACAATCCCA 
    AACACATTAG CTAAGAAAGG AACATAGAGG ATGACACAGT GTAGCGCAAA 
    GGAGACAGTC ATGGCCACTA GTAGCCAAGG GTTTCTCCAA GGTGGCATCG 
    TTAANANACT GTTGTCCTCG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 437743 [Map]; Strand: c
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: -501; Region: promoter
    Flanking Genome Sequence: 11-4815-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TAATTAGCAA 
    CACAGTAAAC ATCATAGATT CCAGTAATGC ATCAGCTATA AACAGATCCT 
    AGCAGTGTGA AATAGTAAAT ATGCTACGAT TTAAAGGTTT GGATC

AT4G00893.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00895.1

Model type
Protein coding
Short Description
ATPase, F1 complex, OSCP/delta subunit protein
Computational Description
ATPase, F1 complex, OSCP/delta subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR