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11-4845-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 498926 [Map]; Strand: w
      • AT3G02420.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -85; Region: promoter
      • AT3G02430.1 - [+] show detail - Protein of unknown function (DUF679)
        Distance: -419; Region: promoter
    Flanking Genome Sequence: 11-4845-1 - 5-prime edge 
    TACTTACTAC TAGTATCTGT GGACTTTTGC AAGAGCGACG ACGTTTGGCA 
    ATCAGTTGTT TATGATATTT AATATAAAAA TAACTACAAC TTTGCAAAAG 
    ACTGGAAACT TTGAGGGTTT GTATGCAATT TATCCAAAGA AAGAAAATGA 
    ACAAAACAGA GCATTGGGAA AGAAACCCTA AATCGTGAGA ACAGAGAAGG 
    ACTAGCGTGC GAAGAACAAG CAGAATATGA CACAGTTATA TCTAGCTCAA 
    TCACTGTTTT CAGCATTATG TTCTATCTTG TTAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 498859 [Map]; Strand: w
      • AT3G02420.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -18; Region: promoter
      • AT3G02430.1 - [+] show detail - Protein of unknown function (DUF679)
        Distance: -486; Region: promoter
    Flanking Genome Sequence: 11-4845-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTAAGTAAAG TATAGGAAAA GTGGACCAAA GAAACAAAAC CCATACAAAA 
    AAAGTCGAAT CCAAATCTCT CTCTCCGGCG ATCTCATCCA TGGCGGAAGG 
    CGGCGAAGAT TCCCAGCGGT TGAAGAAAAT TGCGGCGGCT GCCTTCGACT 
    ACGAAAACGA CGCTCGATGG GCCGATTACT GGTCCAATAT CCTCATCCCT 
    CCTCACATGG CTTCTCGTCC CGAGGTCGTC GACCATTTCA AGCGCAAATT 
    CTACCAACGC TACATCGTAC TTACTACTAT CTTCCCTACT CTTGAATTTG 
    CTTATCCATT TTCTTCATTA CTTTGAGTTT CGAGTTTGAC TTTGTGTTGT 
    GTGCGCTACT GATTTGGGGA TTTAGTGTGG ACTTTGAATC TTAGGTTTTA 
    CAAGTGTGGT TGTTGATGTT CTTTCTGCTA AATTGCTTAG TCCTTGGGTC 
    CGAATCTCCT CGTGATTAGG TTATTAAGCG GAGGGTAGGG CTTTTCATTG 
    AATATTCGTT AGGTCCTGTT TATAATATGT GAAGCCTTCG TGTTGTTCAT 
    CTTTGCTCTT CCCTATGAAG ATGTAATCTG GATTTGTTTC TAAATCTANG 
    GTGCTTGCCA TGTCCTTCTT TTTTGCAGGA TCACCANCCC GGGCCGTNGA 
    CCACCNGNNC CNNNNNA

AT3G02420.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02430.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF679)
Computational Description
Protein of unknown function (DUF679); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT4G24310.1); Has 267 Blast hits to 259 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR