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11-4855-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18296026 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 201; Region: intergenic
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: 3404; Region: intergenic
    Flanking Genome Sequence: 11-4855-1 - 5-prime edge
    GGAGATTCGT ATGGACGAAA AAATCTTGAA ATGGGTGGGG CTGTGCGAAA 
    TGTTTTTTTT TTTTTTGGNA AATTTTTTTN NCAACCTAAA NNNCCGGGGN
    CTTTTNTNNN NGGGCNANNN NCCCAAAAAA AAAAANATNC CCNCCCTTNA
    AAAANTTTNN NTTTTNAAAA AANGGGNAAA NGGNAAANTN NTTTTNAACC
    AAAAAAANNT AAAANTTCCA ANCCCTTTTG GGGGNTTTTT TTNNNNNANT
    TCNAAANGNN GGGCCCCCNA AAAAAAAANN NAAANNNTTN NAAAAANTTT
    TTAAAAACCN NNCCTAAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18296095 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 270; Region: intergenic
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: 3335; Region: intergenic
    Flanking Genome Sequence: 11-4855-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    TCTCCTACCG TACGAGACTC TCGAGACCCT TCATCTAGAG GTTTAAAATA
    TGAAAATTTT AAAGAAAACT TTTAACCACN TNGGTCTTGT GCATTCNGAA
    GTTGNTGATA AATACTGGAT TTCTACACTA ATTATTAACA TAGTTATCCT
    AAGAGTTGAA GTCAATGTTT GATTAAGAAA AAATTATCTT GATTTCCCGT
    TTTGAGTTGA AGACACAATT ATTAACCTTA AGTGGTCCAT ATGATGCCAA
    CACAAAAGGT AAATATCTTT TTCTTGGTGG GTTAATTCAT CTATTAAACC
    TGAAAATAAT GTATGTATAA ATCAACTAAA CTAATCATTC TCATACGATT
    GATTCATCAT CGTAATCAGA AAAGTTACAG AAACAAATTA GTCCTTAGAA
    CTAAAACATA TCACGTATTG TTCGTATTAA AAGAGCATTG GATTTTCTAG
    ATTGATTCTA AACTAAATAA AACTAAAAGA GACGTAAGTA AACATACTAA
    CATGATCTAA TTTTTCTTGT CCGCTAAACG AAGTTGGAAA CCAAAAATAA
    GTTTTGCGAA CCGACAGGTG TCCGGAGTCC ATAAATTGAT CATCCAAATA
    TTAATTCATG GTCAAAGACT AAAAACAGAT GATTAGCAAT AATCATATTT
    ACATTGCACA TGTCTTGACG ACAAAACGGA TGAGAAAAAC GGATTATCAG
    GAGATCTACC CACGTGGAAT GTAAT

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49435.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 16
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 16 (LCR16); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 30 (TAIR:AT3G43505.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR