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11-4855-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18296026 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 201; Region: intergenic
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: 3404; Region: intergenic
    Flanking Genome Sequence: 11-4855-1 - 5-prime edge 
    GGAGATTCGT ATGGACGAAA AAATCTTGAA ATGGGTGGGG CTGTGCGAAA 
    TGTTTTTTTT TTTTTTGGNA AATTTTTTTN NCAACCTAAA NNNCCGGGGN 
    CTTTTNTNNN NGGGCNANNN NCCCAAAAAA AAAAANATNC CCNCCCTTNA 
    AAAANTTTNN NTTTTNAAAA AANGGGNAAA NGGNAAANTN NTTTTNAACC 
    AAAAAAANNT AAAANTTCCA ANCCCTTTTG GGGGNTTTTT TTNNNNNANT 
    TCNAAANGNN GGGCCCCCNA AAAAAAAANN NAAANNNTTN NAAAAANTTT 
    TTAAAAACCN NNCCTAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18296095 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 270; Region: intergenic
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: 3335; Region: intergenic
    Flanking Genome Sequence: 11-4855-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    TCTCCTACCG TACGAGACTC TCGAGACCCT TCATCTAGAG GTTTAAAATA 
    TGAAAATTTT AAAGAAAACT TTTAACCACN TNGGTCTTGT GCATTCNGAA 
    GTTGNTGATA AATACTGGAT TTCTACACTA ATTATTAACA TAGTTATCCT 
    AAGAGTTGAA GTCAATGTTT GATTAAGAAA AAATTATCTT GATTTCCCGT 
    TTTGAGTTGA AGACACAATT ATTAACCTTA AGTGGTCCAT ATGATGCCAA 
    CACAAAAGGT AAATATCTTT TTCTTGGTGG GTTAATTCAT CTATTAAACC 
    TGAAAATAAT GTATGTATAA ATCAACTAAA CTAATCATTC TCATACGATT 
    GATTCATCAT CGTAATCAGA AAAGTTACAG AAACAAATTA GTCCTTAGAA 
    CTAAAACATA TCACGTATTG TTCGTATTAA AAGAGCATTG GATTTTCTAG 
    ATTGATTCTA AACTAAATAA AACTAAAAGA GACGTAAGTA AACATACTAA 
    CATGATCTAA TTTTTCTTGT CCGCTAAACG AAGTTGGAAA CCAAAAATAA 
    GTTTTGCGAA CCGACAGGTG TCCGGAGTCC ATAAATTGAT CATCCAAATA 
    TTAATTCATG GTCAAAGACT AAAAACAGAT GATTAGCAAT AATCATATTT 
    ACATTGCACA TGTCTTGACG ACAAAACGGA TGAGAAAAAC GGATTATCAG 
    GAGATCTACC CACGTGGAAT GTAAT

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49435.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 16
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 16 (LCR16); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 30 (TAIR:AT3G43505.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR