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11-4861-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1723827 [Map]; Strand: c
      • AT1G05750.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT1G05760.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4861-1 - 5-prime edge 
    NNTNTAATGC CNCNGGACNA CANNACATCG GNGTTTATCA NCGCCCAATA 
    GCAGTACTAC CTANAANNNN TNGCGCCGAN GCAGAGGAAN ANTAGACANA 
    ANTNGAACNG GNCNGAAAGT GGCNGCATAC NACTNTATCC TGCTGCCTGT 
    ACATTTANAA TNATAAAAAT TCTTNTATGA ATTNNCTGAT ATGAGNTNCT 
    TCTANGCCTT TNTGANACAN CNTGAACAAT ACCANANGNA CCTNANAACA 
    NAACTNNCAT ATCTNCNNAA AATGCANTAA CATGGATCTA GTTGGNAATA 
    NTTACNCTNA NNCTNGCANG TCNNATANAT GTNGAACTGN CGNTGCNTTT 
    CGCTGAATCA NNNNTGNGCT ACGACCACTG CTANGTNAAC ATAANGCTAG 
    AAAATGCCCC AAGGTANCAC AAAANTNCAC GCAAACNNAC CACCAAANTG 
    TTTGCANAAT GTGGGAGGNT ANTGAACTGT NTANTANCTG TGACNGANNN 
    CCACCAATCN TCNTCAACAT AAACATGACG AGGACANNTN ANATTGCACA 
    TGGGANCCCA NGTTACNCNT ATTNGCCCGA TGNAGANCGG NCGNCCAANG 
    NAACATNGGT GGGGATTNCG ANGCTNCAAT CCNGGGNCCG NAGANNNNGN 
    NNNNNTNTAA NTTTTNTTAG TNNATTGCGN NNGTNTGGAG NTNGNANANA 
    NNTGGATCAN AGNNNANGNA TGAGAGAANA TAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1725663 [Map]; Strand: c
      • AT1G05770.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G05780.1 - [+] show detail - Vacuolar ATPase assembly integral membrane protein VMA21-like domain
        Distance: -945; Region: promoter
    Flanking Genome Sequence: 11-4861-1 - 3-prime edge 
    ATNGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    CCCATAGAAA CCGCCGAACT GGCAGAAATT TCCCTAGTTT GAATATGAAC 
    TGTTGTTCGT GACTCCAACT CGGAGACTGA GAGCCAAAAG GACCGTACTG 
    ATTAAGGTTG GTAGCAAATG CAAGAGACCT TATCTGAGGG CCGCTAGCGC 
    CATCGGACTT GAGATACTCT CCACTAATTC CTGTTATGTA CTCATGTGGG 
    CAGTTCAAAA GTATCTGCAT AGCCCAAAAT CCACATTTTA ATTTATATTA 
    ACCATGTTCG TGAGATCAAT ATATATAATT AAGTACATTA AGTTGTTGTT 
    AGTAAATTTC GAATTTAGTG ATTCGTGTAC TAATGAAGAA AAACAAAAAC 
    AGAACACACT CACAACGTCA AACATCCTGC CAGTATTCTG ACCGTGGCAG 
    GAGGATAAGA AGAATGTATC GTCGAGCATG AACTGGAACT GGATAGAGAA 
    AACACCGGTG GGACCATGAG ATAGAAATAT TTGAGAGATG ATTCCATTGT 
    GACTTCCTTC ATCCCAATCG ACCATTGTTT TCTTACCTGA AAAATCCGTT 
    CCCACTGGTC CTATCTTGAT TTTCCCTTCC ATTTTCTTCT TTATGTGTNN 
    TTTTTGTTCC CTCTTACTTT AAGGATAATG CAAGAGTTAA TTTCTTATAA 
    NGTCGGTGTT TTTAGGATAA TCTTGTTACA TGATGAGATA TTCCTTGCAT 
    AACTTGGAAA ACAATNTATT TTCCTNACCT TTNT

AT1G05750.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.
Computational Description
pigment defective 247 (PDE247); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1; Bacteria - 18; Metazoa - 75; Fungi - 77; Plants - 41230; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05760.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Curator Summary
Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance
Computational Description
restricted tev movement 1 (RTM1); FUNCTIONS IN: sugar binding; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05770.1); Has 829 Blast hits to 525 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 828; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05770.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Computational Description
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05760.1); Has 502 Blast hits to 381 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05780.1

Model type
Protein coding
Short Description
Vacuolar ATPase assembly integral membrane protein VMA21-like domain
Computational Description
Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR