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11-4880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19585533 [Map]; Strand: c
      • AT2G47810.1 - [+] show detail - nuclear factor Y, subunit B5
        Distance: -1915; Region: intergenic
      • AT2G47820.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1604; Region: intergenic
    Flanking Genome Sequence: 11-4880-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCACAAAG GTGTTATTTT ATCGACCAAC TTTAGGATTT 
    AATATCTTAA ATTTTGTACT ATATAGATTT GTATATTCAC GTTCTCATGG 
    TTTCAACAAC TAATTAATAC TTTATATGTT TTCTCCCTGA AATTCCAGCA 
    AATACACATA TTATATACAC ACAGTTTTTC ATTAGTAGTA ATTCTTACCT 
    AAGTAACTAA GTAAGGCGCA TCATTAGTTT TTCTACTAAA CATACTTTTG 
    GTGTAGGATT CGAAAAATAA ACTTCCATAT GCAACCATAT GACCTAGCTA 
    GTTTCATTAT TACAACCTTA AACCGTTTGA AACCATTTAT GACGAGTCAA 
    TTTCATCTTT TGATTAGGAG GTAGAGAACC AAGTTAATGA GCAAGTAATA 
    CTAATAATTA CTGTTTATAA TATAGAAATG CTATGAACGT CATCATGCAT 
    CGTTCAATAA TTAATTAATA TCTAAAGGCG TTCAACATTT GTTTATCCGT 
    TTCAAGGTGG TCCGATCCAC CATCGGTCGA CACTTGTCCT CACTTTGTTA 
    ATGATTTTAC ATATATGTAT ATGTAGCTGT AATATTTAAC TAATGACTTA 
    GGTTTTTCGG GAAAACAAAT AACATAAAAT AATAGCCAAC ATATCATACT 
    TCTAGAACAC CATGCTCTCC AAAATCTTGT AAAATCCTCT ATGTA

AT2G47810.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit B5
Computational Description
"nuclear factor Y, subunit B5" (NF-YB5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sepal, male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1); Has 1476 Blast hits to 1476 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 353; Plants - 526; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47820.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1).
Link
InterPro Scan - TAIR