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11-4925-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1423014 [Map]; Strand: c
      • AT1G04990.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -1375; Region: intergenic
      • AT1G05000.1 - [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
        Distance: -2579; Region: intergenic
    Flanking Genome Sequence: 11-4925-1 - 5-prime edge 
    CATACGAGAC GAAAATGTAA CATGGTCATT ATAAATTGTT CACACACACA 
    TATTCTCTTG ACATTAAAAC CAAAAAAAAT TTGTTTACAT AGAAGATTTC 
    GAACATCAAG ACATAAAATG AAAAAAGGAA GTATCAAAAA GAGGCCCTTT 
    AAAGCCCAAT TTATGGGACC TTAGGCCCAT TGTAAAGGTA TCAACATCCT 
    CCATTTCAGA AAACGTAAGA TTTTACAAAA CAGACCCAAT AGTATTATTT 
    TACCTGTTGC CAAGGCCCAT TTGTTGGAGA AACCGACCGA AAGGAGTACG 
    AGACTAANAA AATCTCTTGC ACATGTCTTT GTAATGGATC

AT1G04990.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05000.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 669 Blast hits to 655 proteins in 149 species: Archae - 0; Bacteria - 50; Metazoa - 4; Fungi - 355; Plants - 145; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR