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11-4947-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334274 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -797; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -458; Region: promoter
    Flanking Genome Sequence: 11-4947-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTCTAAATGT ATAGTAGATA CGAATTTCCT 
    CCGGAATGAC TCAGAGAACA GTGAGAGATT AGTAGATAAG ATACTTAACT 
    TTTGGGGAGA GACCTCAGGA CCCATATGAC TTGAAGACTC ACACCAGCTC 
    TGAAGTTAGA CGGGTTTTGG GTCTCCGGGT CAAGTTTAAA GAAAAAATGT 
    TAAAGTAGAT TTCCCTTTCT ACTTTGGTTT GAGATGAGTT TAGAATTTAG 
    TTCGATGTTA CGAACGTGAA TATATACCCA AAACTTGTGA TGTATATAAA 
    TGCTTATCAA TCTCGAATCT CTCTGTTACT GTAGCGTGTA ATCCACGTTT 
    GAAGTTTTTG TTCGATTCGA TAAATGTTGG AGCCAAAACA GAGACATCAG 
    CAAAAACATG GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334282 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -805; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -450; Region: promoter
    Flanking Genome Sequence: 11-4947-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCTCATTTAG TACCGAATGG ATGTATATTC AGTATTGGAT AGTTAAACTT 
    GTTCCTTAAG AAAAAAAGAA ATCGAGTTCA TGGACTGAGA TTTGCAAACG 
    AGGTCTTATC ATATCTTCTT GTAAAATACC CGATCGGGTT CTGTTCTCAA 
    ATAATTTCAG GTATCAGGTA TTACATGAAC CGAAATTGAT ATCCGTGAGT 
    ATTTTTTATT ACCCGAACAT ATATATACAT ATGAGGACAT ATATACTGAT 
    AACTTGAGTT TGTGAATTGT TTAATGATTG GATTATGGAA CAAGTTAAAA 
    AAAAGGTTTA CTTCTTGTTT TTTATTATTG TCATAAATGA AAACTTCTTA 
    TAATTTTATG GATAGTTTTA TATATGTTTG GGTATATCTG GACAAGGTTT 
    GGGTAAATAA TATTGAAACC CAAAATAATT TTGGTTATTT ATTGGGTTCT 
    TCAACCTATA CCCGAANAGA ACCTATAGCT TAAATAATAC GTATAATCGA 
    ACCAGTCTTA AACTTCTAAA CCGAACCCGA AAGACTCGAT CCAAACCCGA 
    CCCGAATACC CAAATTTCCT CACCTTANAC TAAAACAAAT GGACTCCTCC 
    CTTNTCAAAG AAAAAAAAAN ANNGGGCCNC TTTGACTTTT NNAAAACNAA 
    GGGGCNTTNN AAAAAANNNA NGGAGCCCTT NNNNNNNNNT NNANNNNNNN 
    NGCCNNNCNN AAAANNTNAN AANNNNNTN

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR