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11-4955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 887624 [Map]; Strand: w
      • AT1G03550.1 - [+] show detail - Secretory carrier membrane protein (SCAMP) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G03545.1 - [+] show detail
        Distance: 0; Region: intron2 (NonCoding)
    Flanking Genome Sequence: 11-4955-1 - 5-prime edge 
    NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCATA CACTTGTATG ATTCTACAAC ATAATAAATT 
    GAGATCAAAT GGAGAAAGAC TACAGAAAGA TCAGACATTA GTATTCAGTC 
    ATTATGAAAC AGAGCTCTTT ACCGCAAAAG GATTGATCTC TTCATCAGCA 
    AATGGATTAG GATCGTGTCG TGCCATTCTT TGAGATCGTT TGTTTTAAGA 
    TCAAGAAACT TATTCAATAA CAGAGTTTTT GGAGTTGGTT GGTGAATTTT 
    GACAGAAATC GAAAATGGGA AGAAACTGGT TTGAACGAAT GGATACTTTG 
    TAGTCAGAGA GAGAAAACTA AATCAATGGC GCCAGAGAAA TCGAAGGCAT 
    TTTAGAGGGT GCTCGCTTCG TTTTTTTTCA GCAAAGTTTC AACACCTATT 
    AAACAGGCAT TGTTTTCTTC CAATTTTGGT TTATGGATCG GTTTACTGGA 
    TTTTATTCGG TCAATTGGAT TTAGTTCACT AGTAATAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1215309 [Map]; Strand: c
      • AT1G04470.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: -647; Region: promoter
      • AT1G04480.1 - [+] show detail - Ribosomal protein L14p/L23e family protein
        Distance: -786; Region: promoter
    Flanking Genome Sequence: 11-4955-1 - 3-prime edge 
    CTGATCATTG ATTCTTTCAG TTATCTTTTA ACTTTGAGAA ATATGGAATC 
    TCATAATCCT CAAGCAATTT CAGATTTTAG GATTCGACAA ATATTGCTAA 
    TCAAATTGAG TTCTATGAAA ACAACTATAA CAGAAGATTA TGAAGAAATA 
    CAGTTATTAC AACTTACGAC CATGAAACTT GTACAAATAA TGGATTCACC 
    AGAAACCAAT CCAAATATCT TATATAACCT CAAAGCT

AT1G03545.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G03550
Link
InterPro Scan - TAIR

AT1G03550.1

Model type
Protein coding
Short Description
Secretory carrier membrane protein (SCAMP) family protein
Computational Description
Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF810)
Computational Description
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G33420.1); Has 201 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 4; Plants - 177; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04480.1

Model type
Protein coding
Short Description
Ribosomal protein L14p/L23e family protein
Computational Description
Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Link
InterPro Scan - TAIR