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11-4967-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1188273 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4967-1 - 5-prime edge
    CATATGGGTA TTGTTTTTGG TCTCCGTTAG ATCTCAAATC TTTAACTTTG 
    CATACCCAAA ATAGGAAGAA AGAAGAGTCA AGTCACTAAA ATAACTTTCA
    CAGTCTTTGA TTCGAAGATC TTTGTCGCCG AGAGATATCC ACTCTGATTT
    GAGTTCTGGT AAAAAGTTTC CAGCTTTTGA TTTTTGTTTC TCTCAATTGA
    ATTTCTCTTG CTTGCTCTGT TTAAAAGGAT TAGGATTAAA TCGAATCTCT
    CTCTGTTATG TTTTTTTGTA GATTATTTTG GATTTTAGGA CTCAAAGATT
    ACAGATTTCT TATCAATCAT TCTCTGTTAT TGTTATAGAA CTATTCTCTG
    GAGGAGGTTG AGGTCTGAAA TCATGGAACA ACTTGGTTAG AGTGTGGAAT
    TTTAGCTGAT TTGATCTTTG ATTCATCTGT GATCATAATA ACTATGAAGA
    TGGACAAAAA GACTATAGTT TGGTTTAGAA GAGACCTAAG GATTGAGGAT
    AATCCTGCAT TAGCAGCAGC TGCTCACGAA GGATCTGTTT TTCCTGTCTT
    CATTTGGTGT CCTGAAGAAG AAGGACAGTT TTATCCTGGA AGAGCTTCAA
    GATGGTGGAT GAAACAATCA CTTGCTCACT TATCTCAATC CTTGAAGGCT
    CTTGGATCTG ACCTCACTTT AATCAAAACC CACAACAC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1188387 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: -111; Region: promoter
    Flanking Genome Sequence: 11-4967-1 - 3-prime edge
    NCGAGGNGAG CTTANGACNG TGACTGNTNG TTCCCNCTTN CTTCTCANCT 
    GAGACNAAAG TCNACCACTC GATCCACNAC NACGCAGGCG TGNGTTCTNA
    GTAATAGCGG TTTNTTTTAC CGACATCGTC ATCTGTTGAT TTGCTCATNT
    ACANATANTT ATCGGGGATC ATGTACGAAC NTTTCTCTTG TGAGNATATT
    TTTTTATAAG AGATCNAATA NTGTTNGAAT GTTGAGTGGG CCTAAAGCNG
    CAGNGAAAAT ACTCTNATCT TCTTATGCTA GAGAAAAAAG NGTTTTTAAN
    TNTTGGGGCC NANGNCGGNG GCTNANGAAC TCAATTCTGG TCGTGCCCNC
    TTATGTANAA NNCATTTNNT ATNTAAAGTC TATATGGNAN AANNGTNANA
    NCTTGATTNT NANTNAGTCA TTGCCANGNN GGGATCTNTN TTNAANATCC
    NCTGGNTTTA ANTTTNACNG NAGGAAAANN GTCNNCGATT AAANTGGTNT
    NNTCAATCTT TGANTCCTNC GTNTNCCCCN TTNTTNTNAG GACCATTTGT
    NTACGNNTAA TGACNNGNTA TATTCNGATA NTTNGANAAT NCAAANANCG
    NATNTNAGNT TTTGNGNATG NNTAANTTNN GGNGANNAAC TNGGGNGNGT
    GANNNANNGA AAATTTNGGG GNNGANNATA TAATCAGGNG NTNCANTGNN
    NNCNNANNCC NGANTNANTA NTTTCNAGAT GNGANGTGTT GAGNNNNCGT
    NGGNGGNAT

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.2

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR