1. Home
  2. Mutant Lines
  3. 11-4985-1

11-4985-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 247882 [Map]; Strand: w
      • AT1G01680.1 - [+] show detail - plant U-box 54
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-4985-1 - 5-prime edge 
    CTCCCACTAG AAGAACAGAT AAAGCAAAGG TCAAATTAAA ACATGATGTG 
    TGACTTAACT ACAAATAGCT AGTAATAGCC GTATATGCCC AAAAAACGAA 
    TTTGTTTTGG AAGTAGGTAG GGTTGAAACC AAATTTGGTT TTAATTGTTA 
    AAACAAACTA TATCATCAAT CATCTAATCT AAGACGTGTC AGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 247762 [Map]; Strand: w
      • AT1G01680.1 - [+] show detail - plant U-box 54
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-4985-1 - 3-prime edge 
    NGNGTTNCCA AGTACATAAG ATGTTCCAGG GAGATTGCAA TTGCACTTAT 
    GTCACATATG CTAAGAACTA ACCTTGAATC AATGCAGATG TTAGGATTGG 
    AATTTTTACT CTGTTTTTGT TTGTGCATTT TCAGCAAGTA GGCNTTGAAC 
    AAAGTGAGAT CGATGCAATC CAAGATTCAG AACTGAATAC TTCAGTAAAT 
    AGCCTCTACA AGTACCGTGA TATCTGCATA AACAAAGGGG TGAGTTCTCT 
    TTTCGGTTGA TGGAGCTAAA AGGAAAACAT AATGTTGACT TATTTTATTT 
    AATAGAAATC TATATTGATG CAGGTTAATG AAAAAGATGT GGATACATCA 
    ATGATCTCAG GACATGATGT GGGGGAAGGG ATTGTGGAAC TCATCTATCA 
    AAACATTATC ACGAACCTCG TTATGGGAGC AGCAGCTGAT CCTCACTATT 
    CCAGGTAAAG ATAACTTGAG AATCCATCAA TAGTGAATCA ATCTAATGTA 
    AACCAAAAAT ATAGCAAAAG ACTCTAACCT TCTCTTTGAT AAAGCAGGGG 
    AATGTCTATC ACATCTAGGA AAGCAGAGTA TGTGAGTCAA CATGCACCTC 
    ATAGCTGTAA AATATGGGTT CATCTGCAAG GGGAAACTCA TCAAGCAAAG 
    GTTAGCTTGG GATATTACAC GTGTGTGTGT GTGTGTGTTA NANGNCCTAN 
    TGGAGAGTTC TANANAACTT TCATTG

AT1G01680.1

Model type
Protein coding
Short Description
plant U-box 54
Computational Description
plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR