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11-5005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364424 [Map]; Strand: w
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5005-1 - 5-prime edge 
    CNTGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATAA GGCATGTTTT AATTGTCCGG TTTTGGCGTA 
    CATATCAACC AATGATGNCC TGACGAANGA CTCACAGTCA ACGAAATTCT 
    TCAAAGTCGC GGCATGAAGA GCCCTACCCA ACCATCTAAA ACCTAATTTA 
    GAATTAGACT TGAGTACAAA CGGAAAAGTT AGCCGATCGG GTTTCACACC 
    AAGCCTTAAC ATGAGAATGA AATGACGAAC CGAAGACTCG AAACGAGCAT 
    TCTCCGTCAA ACCACGGATC AAAGCATTTA AAACAAAAGG ATTCCTCTCT 
    TCAGAATTTC TGAAAATCGA GAGGCTATAA TCCGGGGACT TGAGAAGCGA 
    AGAGCAAGAT ACGAGCTGAG CAGCGACGCG GCTACTGAGG ACGCCGCGAC 
    GGAGGATCTG GGCGTGAACA TGGCGGAGAC TTGCGGTGTC TTTACAGGCG 
    TGAATCAGAG ATATGAAGTG AGACTCGTCC GGTGAGGCTT GACGATCGGC 
    CGGAAAATAG ATTTTAGCGG GAGAAGATTT CGGTTTAAAA AGAACAGAAA 
    GCGATTTCAT CGTACCTCAG TCAAAACGCT CATCAGTCAT CAGATCTCGC 
    GGTGCAAAAG ACTCTTATAT ATTTGGCTAG TGGCTACTTA TCTTAACCGG 
    ATTAAACCGT ATTGCTCTAA ATATATCAAA CCGGNTATTT GCGAACCCGG 
    TTCANACGAA GCAGTNTGGA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364416 [Map]; Strand: w
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5005-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAGTGTTCGA AGAAAGTCCT GATAGAATCA AAAAGGAGAG TATTTTGATA 
    TGGAATGTTT TGATTAATGG GTATTGTCGA GCCAAGGATA TGCATATGGC 
    TACAACACTT TTTCGATCCA TGCCTGAGAG AAATTCAGGA TCTTGGAGTA 
    CNTTTGATCA AGGGTTATGT TGATAGCGGC GAGTTGAACA GAGCAAAGCA 
    GCTTTTTGAA TTAATGCCAG AGAAAAATGT GGTGTCTTGG ACAACATTAA 
    TTAATGGGTT TTCTCAAACT GGCGACTATG AAACTGCGAT TTCTACCTAT 
    TTCGAGATGC TAGAGAAGGG CTTAAAGCCT AATGAATACA CAATTGCTGC 
    TGTGCTCTCT GCATGTTCAA AATCTGGTGC TCTTGGATCA GGAATAAGAA 
    TT

AT1G04840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR