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Mutant Lines
11-5016-1

11-5016-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 4348256 [Map]; Strand: w
- AT1G12750.1 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: exon1 (5UTR)
- AT1G12750.2 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: exon1 (5UTR)
- AT1G12750.3 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: exon1 (5UTR)
- AT1G12760.1 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
  Distance: -242; Region: promoter
- AT1G12760.2 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
  Distance: -242; Region: promoter

ATGGTTACAC TGAATTAGAA AGTGCTGCTA CATAGAAATC GAACAATGAA 
GCTCACCGAT AGAGTAAAAC TAGGCATGCT TCCATCTCCG AGAGCTAAAA 
TCCTAGAGAC CACCACTCTC TGCCGACGCT AAAGGTTGAA GATGAAGAAG 
ACGACATTGC TTTGACGGGC CTTTAAAAAT ATTAAAAGAG AGACACATCA 
ATACCTCGTG GCCCATTTAT ATAGACCCCG CTTAATTTTG TCTGATTGTT 
GACTGTTGAC TTTTAGGGAC CACATGAAAC TATTAAATGA CTTTTCGGAT 
TTCAAATATT CAATTTGAGA GATATTTTTT TCTGTTAGTT TCCCTTAATC 
ATCATCATCG TCTTCATCAT CATCTCTCTC TCTCTTCTCT TCGTTCCTCT 
TTCTTTACAC GCTTGAAACC CTAGCAATTC CAATTTCGTT TCCTCTAATA 
NAATCTTCAT CTTTTTATGG CGTAACGTTA CACGAATTTC AACGATTTAG 
GTTTTTTTTT TTTTTTTTTG GNNAANCCCC CCCCNNANNN AAAANNNNNN 
NCCGGGGNAC CCCCCNGGGN ANTTCCCNNT TTNTNCCCAN NANNNNNTTT 
TTNNNTTTCN CCCNCNCTTT TAAACNCCCC CCGNNNNTTT TNAAGGGGGN 
NNNTTTTTGA GNNNNCCCCN NGGNGNGGNN NGGGGGGGGG ANNGAANTTT

3 prime edge [+] show sequence

Chromosome: 1; Position: 4348140 [Map]; Strand: w
- AT1G12750.1 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: intron1 (5UTR)
- AT1G12750.2 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: intron1 (5UTR)
- AT1G12750.3 - [+] show detail - RHOMBOID-like protein 6
  Distance: 0; Region: intron1 (5UTR)
- AT1G12760.1 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
  Distance: -358; Region: promoter
- AT1G12760.2 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
  Distance: -358; Region: promoter

GTAACCATGG TTGATGACGA CCGATTTGAG GATATATGAT TTCGGTTTTG 
TAATTTCATT GTCTGATTAA TATGTTTTGG GGTTTTGATG TTGAATATTG 
TTTTAACAGT AGTAAAGTAT GTACTTTTGA CTTTTTGGCN TTTTTGCTTG 
TAGTATCTCA ATGCGATGTA TCGAGGTCAT TTGAGATCAA TCTGTGACTG 
TGAGATCTTT TCATAGATTA ATTTGCATAT GGTGATAGTT ATTTAATTTG 
CTTCATGAAA ATGTCATTAT ATATGAAAGT ATTCCTGAAT TTTCGATAGA 
AAGTTAGTTG CTTTACTCAA GTCGTTTTAA TCTTCTCGGT ATATTACATT 
GTTGTCTTAT TGGCTCTTTT CTGATTTTAT TGCCTCTTTC TGTTTTGGTT 
CCTAGAACCA GCATGACATC TCGAGCACAC TTGGCTATGG GGAGTTACAA 
TGGATATATA GTGCGTGTCG GTTTTTTAAC CAAGAAAACG TANACAATGT 
GTGATTTTCT ATACGAATGG AAGCACATCA ACCATAAATC TTCGTCGAAA 
GTTTCCTCCT CNTCAATGTA TTGGAAGGAA ATATTGTTGG GGGATCTGAA 
ACTANANAGG TCANTTATGT ATTTTGATCC CCCACCTGAC TCAAACTCTC 
CATTNCCATT TTTACNAAAT TCTGACTTGC ATACNCCTGC ACTAAAGTTT 
CTGCAGGAAA TGAAATAATC NC

AT1G12750.1

Model type: Protein coding
Short Description: RHOMBOID-like protein 6
Computational Description: RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12750.2

Model type: Protein coding
Short Description: RHOMBOID-like protein 6
Computational Description: RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12750.3

Model type: Protein coding
Short Description: RHOMBOID-like protein 6
Computational Description: RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1).
Link: InterPro Scan - TAIR

AT1G12760.1

Model type: Protein coding
Short Description: Zinc finger, C3HC4 type (RING finger) family protein
Computational Description: Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12760.2

Model type: Protein coding
Short Description: Zinc finger, C3HC4 type (RING finger) family protein
Computational Description: Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR