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Mutant Lines
11-5018-1

11-5018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 10491942 [Map]; Strand: w
  - AT1G29950.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT1G29950.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -33; Region: promoter
  - AT1G29951.1 - [+] show detail - conserved peptide upstream open reading frame 35
    Distance: -33; Region: promoter
  - AT1G29952.1 - [+] show detail - conserved peptide upstream open reading frame 34
    Distance: -33; Region: promoter
Flanking Genome Sequence: 11-5018-1 - 5-prime edge
```
GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCTCT CATAAATAGC TATTTTATGG TTTATCAGAT 
GATTGCTGAA TTTGATTTTT CTATTGAATG TTCTGTCTTG TTTATGTTTG 
TTTGTGTTAT TATTAATAAA CTATTCATGA TCGCGTAAAG ATTCTTTCTT 
TTAACAAGTC CAATTCTTTT GTTGAGGTTT TGTTTCCTCT ATGTGTTCTG 
TTTTGAAGCA GAGTTGTTAA GTTATTTTGA TTTTGGTTTG TGATCATGAA 
ATCGAAAAAC ATTTATTCTG GATC
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 10491920 [Map]; Strand: w
  - AT1G29950.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT1G29950.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -55; Region: promoter
  - AT1G29951.1 - [+] show detail - conserved peptide upstream open reading frame 35
    Distance: -55; Region: promoter
  - AT1G29952.1 - [+] show detail - conserved peptide upstream open reading frame 34
    Distance: -55; Region: promoter
Flanking Genome Sequence: 11-5018-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TCAAAGTACT 
AATTACAAGA CAAAGAAAAA ACATATAAGT CCTAATAAGT CAGAAATTGC 
GGCGGTATAA AGAAAGAAAG AAGCAGAAAA CATTCATACC GTAGAAGAAA 
TCAAAAACCC TTTGGATCAA ATGAATCGGT GATGCNGTAA AAACTAAAGC 
T
```

AT1G29950.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G50010.1); Has 770 Blast hits to 729 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 29; Fungi - 28; Plants - 411; Viruses - 2; Other Eukaryotes - 298 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G29950.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G50010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G29951.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 35
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF35 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2
Computational Description: conserved peptide upstream open reading frame 35 (CPuORF35); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G29952.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 34
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF34 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2
Computational Description: conserved peptide upstream open reading frame 34 (CPuORF34); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR