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11-5023-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24759359 [Map]; Strand: w
      • AT1G66380.1 - [+] show detail - myb domain protein 114
        Distance: 869; Region: intergenic
      • AT1G66390.1 - [+] show detail - myb domain protein 90
        Distance: -4598; Region: intergenic
    Flanking Genome Sequence: 11-5023-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCGTATATGC AAAATATAAT AATCGAGTAC 
    ATTCAATTCT GGCTTACTTT GATTTCGTGT TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3059605 [Map]; Strand: w
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-5023-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTT AAAGAAAACT TAAGAAACAT TTAATAAACA 
    TAAGGTTATA ATTGTCACTT TAGAAATCTC TTTAACATGT GTGAAAAAAC 
    TAAAACTTGG ATGAATT

AT1G09480.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188; Bacteria - 4702; Metazoa - 514; Fungi - 973; Plants - 2502; Viruses - 52; Other Eukaryotes - 2406 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66380.1

Model type
Protein coding
Short Description
myb domain protein 114
Curator Summary
Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis
Computational Description
myb domain protein 114 (MYB114); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: production of anthocyanin pigment 1 (TAIR:AT1G56650.1); Has 8855 Blast hits to 8248 proteins in 550 species: Archae - 0; Bacteria - 0; Metazoa - 795; Fungi - 489; Plants - 5874; Viruses - 3; Other Eukaryotes - 1694 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66390.1

Model type
Protein coding
Short Description
myb domain protein 90
Curator Summary
production of anthocyanin pigment 2 protein (PAP2)
Computational Description
myb domain protein 90 (MYB90); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: production of anthocyanin pigment 1 (TAIR:AT1G56650.1); Has 8778 Blast hits to 8175 proteins in 545 species: Archae - 0; Bacteria - 0; Metazoa - 824; Fungi - 456; Plants - 5872; Viruses - 3; Other Eukaryotes - 1623 (source: NCBI BLink).
Link
InterPro Scan - TAIR