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Mutant Lines
11-5027-1

11-5027-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 18802780 [Map]; Strand: w
- AT2G45640.2 - [+] show detail - SIN3 associated polypeptide P18
  Distance: -1309; Region: intergenic
- AT2G45650.1 - [+] show detail - AGAMOUS-like 6
  Distance: -1570; Region: intergenic

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCGAT ATATACTATT TAACTCGTGG AGATGATGAG 
GTTCGGATAT TTTTCCTTAA GACCACAAGA CACTGACACG CCGACTGATC 
GATAAAAAAA GTTAAGGCCT ACAATACAAA AGAGTAGCAG ATTCCCTTAC 
ACNGTGTTTC ATTTATGATC TGTTAATTAA CTCCATTGAG CTTCAATATC 
TCATTAGCCG AAAATTAACT TGACGTTTTC CATTGAACTG TCGAAAAAAT 
TTGTAGAAAA AGTGAAATGT CCCCTATTTA ACTTCCAAGT TTAAAACCTA 
AAATTAATTA GTTACCGTTT TGATGAATAA CGTTGAAAGA ATCGTCAACA 
TATCAAATGA TGCAGATACA ACAAGGGACA AAAACATCAA AAAATTGATT 
AAAAATAATC ATTCAGATAT TAGCAATTAA ACTGTAAGTA AATGATTGCA 
TATATATATA TGAATGAATA CATATATATG TATCAAACTG TAAGTAAATA 
ATACATACAT ATATATATAT ATNNGAAAAT ATCTCATTTT TCANTCATTN 
ANAGAGGTAA ACATTTTTAA AGACAATTTT ACCTAGCCCA ACTTNTTACT 
ATATTTAACC AGCTCTGCGA GAGCTTNAAA ACAATGAANA ATTTTNTGNC 
NCTTTNANAG ACCAAANAAA NGTTNACATT TTTGNAAACC CAACANNATN 
AATTNCGCNC GNGGNAAACT NNC

3 prime edge [+] show sequence

Chromosome: 2; Position: 18802729 [Map]; Strand: w
- AT2G45640.2 - [+] show detail - SIN3 associated polypeptide P18
  Distance: -1258; Region: intergenic
- AT2G45650.1 - [+] show detail - AGAMOUS-like 6
  Distance: -1621; Region: intergenic

TATATCCTTC TTCTTCGTAC GAGGTTAAGA CAACTAAAAT CTTAAAAAAT 
AAATTAAATA CTTAAAATCA ATGAATCGTT TCATATATAT ACATATATAT 
ATAATATTTA TGTGCTTCGA TTAATTAGTA CATGTAACTA TTTTACGAAC 
GTTTAGTTAT CGCCCATTTG CACATAAGTT TACAAACAAA CATAGAATCA 
TCACATTATA TATGTGCAAA ATTCAAATAC AAGATGATAA ATCTTTACAT 
CTTCAACTAC AAACACGATA TATGATATCA AGTTATCAAC CAATCAAGAG 
CTGTAATCTA GTAGTTTTTT ATTTTTTGTT AAAAAGTTGT AATCTAGTAG 
TTTCATTTTC ATCTATCTTT TTACATTATA GAAAAATGAA AGTATAGAAA 
AATGAAAGCT

AT2G45640.2

Model type: Protein coding
Short Description: SIN3 associated polypeptide P18
Curator Summary: Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.
Computational Description: SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250).
Link: InterPro Scan - TAIR

AT2G45650.1

Model type: Protein coding
Short Description: AGAMOUS-like 6
Curator Summary: sequence suggests this encodes a MADS-box transcription factor
Computational Description: AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR