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Mutant Lines
11-5068-1

11-5068-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30085524 [Map]; Strand: w
- AT1G79990.1 - [+] show detail - structural molecules
  Distance: 0; Region: intron3 (CDS)
- AT1G79990.4 - [+] show detail - structural molecules
  Distance: 0; Region: exon4 (3UTR)
- AT1G79990.2 - [+] show detail - structural molecules
  Distance: 0; Region: exon4 (3UTR)
- AT1G79990.3 - [+] show detail - structural molecules
  Distance: -257; Region: promoter
- AT1G79990.5 - [+] show detail - structural molecules
  Distance: -257; Region: promoter

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT CTACTTGGTG CAGCTTTGTG TGTTTTAAAA 
CCAGTGTCTC ATTCATCATA CTCTTTTACC ACCAATTGAA TCCTTCCAAT 
TTACTGTTTT TTGGGGGGGA AAATTACTGT GTACTAACAA GTAAAAAGGG 
CCGTCCGTCA AAATGTAACA TCTCCTATAT ACNGGTGCGG TCAAGTTAAA 
AAAAAGAGCA AAAACGCGTG ATAAAACGAC GTCGAATTAG AGATCCTACT 
AGACCCAGAT TCANATCCAA ATCGCCAACG CGCACTGGAA GTGGGATCAC 
CACCACTGCG CTTCTTCTTC TTCGTCATCT CTGATCCCCC CTGCGATCAG 
GGGCCATCTC CGTCGATAAT CCGATCTCCG GTTCAAACAT TCGTTTGGAC 
TTGCAAAGAT GGNGAGTGAC ATGATCTCTC AGTTTCTCCA TANATCTACC 
TCTGAATCCT CTTTCAATTT TTTACTTGAA ATCTCATTTC TGGGCTAGTC 
TACGTAANAG TGTTCCTCAT TGCACTAAAA TTTGATGTTC CTTCAGTCAT 
CCCCTAANTN GAACGATATT TTCTACTATN CCAAGTNNNG GNTNCTNANA 
ATATNATNAA GTNTTTTNGN ACNANCTA

3 prime edge [+] show sequence

Chromosome: 1; Position: 30085508 [Map]; Strand: w
- AT1G79990.1 - [+] show detail - structural molecules
  Distance: 0; Region: intron3 (CDS)
- AT1G79990.4 - [+] show detail - structural molecules
  Distance: 0; Region: exon4 (3UTR)
- AT1G79990.2 - [+] show detail - structural molecules
  Distance: 0; Region: exon4 (3UTR)
- AT1G79990.3 - [+] show detail - structural molecules
  Distance: -273; Region: promoter
- AT1G79990.5 - [+] show detail - structural molecules
  Distance: -273; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
AAAATCCAGT ATAAACAAAA AAAAGAAGCA ACATGAAATC AATAACCTAT 
TCGAGTCTAA TGTTTTTTTC ATACAAAAGA ACAAATTGAA ACGTATTCCA 
AAGTCTTAGT ATTTGAAGTC ACCTAAAAAT TGCAGTCAGA GTTGGTGCAC 
CAGTGTCCAA CATTGTTGCT TGGCTAGCTG AACTTCCTTT CGCCCATTCT 
ACTCCTCTGA TTTCATCTCT GTACATCACA ATTGTTAAGA GTACTAGGCT 
CTACTAGGCT CTACGAGTCG CGCTGCTAAC CCACAAGAAT CTTCATCACT 
TGTTCTTTCA CCAATCTTCA AACCCCTGCA GCAGCAGCAG CATAGGCAGC 
CAAATTTAAT TTCATGTTAA GTCAGTCTTG ANAAAGTAAA AGGTAAAGAT 
ATGCTTGTTC ACACAGAGAG ATTTCAAGAA AGAATGATCA TCTTACTTGA 
GTGGAAGCGA TCCATAGGGA TCTCTCGCTG TTCGCGTTTA ATGCACAAGT 
ACTCAGCTAG CAAAGCCATA ACAGCGAGTC CGGTTCCATT AACAACCCAC 
CACGCCATAG AGGAAGGCCA TCCTCCATAC ATGATGCAAA AGAANAGATG 
TATGATGTAN AGAGTTGCAN ANAAATCTAA GCATTTCCGT GCTCGCTCCA 
CCAAAAATAT CATGTACACA GCCCTGCCAN TTAAAATGAA TNCAAGGAAT 
CTGAAAAGAC TAGTATTAAA GAGGGAAAT

AT1G79990.1

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.2

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.3

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 75407 Blast hits to 32587 proteins in 820 species: Archae - 58; Bacteria - 8535; Metazoa - 29979; Fungi - 16971; Plants - 9768; Viruses - 8; Other Eukaryotes - 10088 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.4

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.5

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74269 Blast hits to 32109 proteins in 811 species: Archae - 56; Bacteria - 8450; Metazoa - 29737; Fungi - 16170; Plants - 9747; Viruses - 0; Other Eukaryotes - 10109 (source: NCBI BLink).
Link: InterPro Scan - TAIR