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Mutant Lines
11-5077-1

11-5077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1355710 [Map]; Strand: c
- AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
  Distance: 268; Region: intergenic
- AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
  Distance: 481; Region: intergenic

GTTTTCCCAG TCTTATACGC GCTTAGTATG CGAGTGGGTA AGATATTTTC 
ATTTGACAGT TCGCCTACCA CGCGCCTCAC TCATGGGCTC ACTTTTATTC 
TGCCCATTGG GCTACAAGGA GCGTAATATA ATTGACCCAC ATAAATTAAA 
AAAGGCCTAC TAGCATAAAC AAACTATTTT GACCCAAAAT CGACAACCTG 
AGATTTTTAT TTTTCCCCGA CTGAACAATG TGGTTAAATT TTTGCAATGA 
TTTTTATCTA ATTTCCCCTA GAAAAATCAT ACAAGCATTA ACCTTTACTT 
TTTTTCTTTT TTTTNGGTAT ATAGCATTAA TCTTTACTTA GGGAAAAATG 
ATAGTTGTTT ACCATTTCTG CTTTTAGTAA TATATANATT TAAAGAAACT 
ACTAACACAA NAACAAGTCG GAACCAATGC AATAAGTACT AGTCTCCAAG 
TTCAAAAAAG GANAACTGTT TNTNTGTTTA ATTAACANAA AACAAAANGG 
CAACTGATCA AATTACAAAA TCATGGANAA GCGTNTTCAA AGGCCTGCGG 
AGGTTGNGGC TCGTCATCTA TGGCCATAGC AAAGGTGGTG GCTGCTTGTT 
GGGCTTGTCC TGCAGCTTNT GCACCCACTG CAGGGGATGC TGTTGAANTC 
GGNGCATCGG TCAAANACAN AACTTNAGGC TCATGCGGAC C

3 prime edge [+] show sequence

Chromosome: 1; Position: 1355786 [Map]; Strand: c
- AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
  Distance: 344; Region: intergenic
- AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
  Distance: 405; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTTCCCTG 
CCGTTTTTCG CTAAAATTAA TAAACTGGGC GCGTGTGGGC AGTTTTTTTA 
CTAATAAAAA CGTAACTGGC CTTCTATCTG ATTAACCTTG TCCGGCCTTC 
TTTAGTGAGC CCATTTTTGT TTTAGTTTTA TGTTTATAGA CCTTATAAAA 
TATAAAGCCC ATATACAGTT GTTCCAACCG CAGCAACAAC TGTATCCAAT 
TAAGGTTAGA CTAATACACA TTTTCTTATT CAACACGCTA ATTTAATCAG 
ATAGACTTTG ATTAGATACT TTGATCAGAG AGTATCTTAC TACATAAATT 
TATCTGCTAT ATCCTCACTG CCACATATTT CTCAAGAATC CCAAAGTATC 
ATCATGCTTA GGTCAAAATG CAAAATATAT AACATCTCAT GAATTTTTTC 
CATGCCTTCA AATAACCCTT GTAGTTTTGA TAGTAGTGAT AAGATATTAC 
CAGAAAGGCA GAAACGATTT AACACACAAA GGAAATAGAT AATAGAGAGA 
TAACATGGCT ACGAAAAGAT AGAGAAGTAG GTTTTAAAAC ACACACGATT 
AAAGACTCCC AAGAGTTTTG AGCCCATTCT CACAAGACGA GATTATAGAG 
AAACCCACAC AAATCCAAAG TTTTTAGAAA CATTCTTCTT AGTATTCCTC 
TCCTTCATCA TCTTCATCGN CACCACCTTN AGCACCGACC TCTTNATAAT 
CCTTCTCCAA TGCT

AT1G04810.1

Model type: Protein coding
Short Description: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Computational Description: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04820.1

Model type: Protein coding
Short Description: tubulin alpha-4 chain
Curator Summary: Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
Computational Description: tubulin alpha-4 chain (TUA4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, cellular response to gravity; LOCATED IN: tubulin complex, cytosol, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
Link: InterPro Scan - TAIR