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11-5081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1873860 [Map]; Strand: c
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -142; Region: promoter
      • AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
        Distance: -142; Region: promoter
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -142; Region: promoter
    Flanking Genome Sequence: 11-5081-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    AATAAAATCC ACCCCCCACA CTACTACCCT AGGCCTAGGG TTGCTAAAAT 
    GCGCACCTAG CCAGCGCACG ATAGCTCTGA TAATATTACC ACCGTTGCTA 
    AAATGAGCCC TGAATTTTCT TCAACGCCCC CCCTTTAAAA AGGAGATGTC 
    TTTTTAGCAA CTCTGCGTTT CTTTCTCTCT CTCTAGTCAC TTGTTGTTCT 
    TACTCAAAGT GTTCATCTCT CTTTCACCGG TGGATTTCTC GACAAAGATT 
    CTAACTTTGA GAGAGATTTT TCGTTTCTAG ATGCAGATTC AGAGCGTATC 
    ATCTCTCGAG AAAGGATCAA TGTCTCATGA AATAAGCTAG ACTCTGTTTC 
    TGTTTTCTTC TTCTTCGATC TCAATTTCTT CTTCTTCGAG CTAGGGGTTG 
    TTTATGTTTG GGAAAGGAAT GGGCACTAGG CAGTATTCAC TGGGAGAAGT 
    AGGGCCACCA ATAAATCCGA GAGCTGGATT GCGAAGGGAA CAAGCTGGTA 
    GAGGTTCATA CAGAGGTAGT TAGTAGATTC GTAGCTCATC TGTAGGCAAA 
    AAGGGTTTCC TTTTAGGTGG CAAGACTGTT TATTTTCANA CNCAGAGACT 
    GATTAANAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1873924 [Map]; Strand: c
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -206; Region: promoter
      • AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
        Distance: -206; Region: promoter
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -206; Region: promoter
    Flanking Genome Sequence: 11-5081-1 - 3-prime edge 
    GGGCCATTCA CGATGGGATT AATAATGTGG AAAAAACATT CGAGTGATAT 
    GATCTCTCTA ATGGCCAGCA AAATGATTCA CCAAGTGAAA TTTTGTTCCT 
    AGTGCACTTT ATTTTACTTT TCTTCATCAT ACAAATTACA CNGATGTGTA 
    GTACNTTGTA ATTCTTTCGC CATACAAATA ACTTTTTTCT TTGAAATGGT 
    GTTTGATAGA ACATAATAAT AATGCGTCTA TATGTTGATG TGATCCTTAT 
    TTTTGATATG ATCTGTTATG TGTATCGTTT GTTCTCCAGC CATTTTTTTT 
    TTTTTNGGGG NNAAAAANGN NTTNGAANNG NGGNNGGGNN TNGGGGCCCN 
    NNNAAANNNT NGGGANNNNA NNNNTTTTTC CCNNNNAAAA AAAAANTNNT 
    NNTTTNNCNA AAAAAATCCC TTTNNATTTN CCCCNTTTTN NNTNAAAANG 
    TTTAAAANNN GNNNNGGGGA AANCTACCNC CCGGGGNNGG AAANNNCCCN 
    GG

AT1G06149.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 8
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1
Computational Description
conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06150.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06150.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1).
Link
InterPro Scan - TAIR