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11-5086-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11269225 [Map]; Strand: w
      • AT2G26490.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G26500.1 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -864; Region: promoter
      • AT2G26500.3 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -911; Region: promoter
      • AT2G26500.2 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -993; Region: promoter
    Flanking Genome Sequence: 11-5086-1 - 5-prime edge 
    TCTGTACTAA CAGGTCACAC AGGTCCTGTG AAATGTTTGG CAGTAGAAGC 
    AGACCGTGAA GCCTCCGAAC GTCGGGACAA AAAATGGATT GTATATAGTG 
    GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11269109 [Map]; Strand: w
      • AT2G26490.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G26500.1 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -980; Region: promoter
    Flanking Genome Sequence: 11-5086-1 - 3-prime edge 
    AGTACAGAGA GGCATGTATG AATATTTCCA TCTCTCTTCC ACACACATAT 
    TGTCTTATCA GCAGATCCGC TAAAAACAAG ACTCCCTGCC ACTTCTAGGC 
    AAAGAACAGC AAGCT

AT2G26490.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G34380.1); Has 38085 Blast hits to 18995 proteins in 635 species: Archae - 34; Bacteria - 5266; Metazoa - 14476; Fungi - 8827; Plants - 4594; Viruses - 0; Other Eukaryotes - 4888 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G26500.1

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G26500.2

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G26500.3

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR