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11-5094-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1447463 [Map]; Strand: w
      • AT1G05040.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protei...
        Distance: 0; Region: exon4 (3UTR)
      • AT1G05040.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-5094-1 - 5-prime edge 
    CTTATAACGA TGATAAGACT CATAATAGAC AACGTCAAAT TGCTTGACTC 
    TAAACTTTGT GGCAATTTGA ACTTCAGACA AGATCAATCA ATTACTGAGG 
    ACAAAGTATG GACCAATACC ATATTGGACC TGGACTTAGA GGTCACTGAT 
    CCTCATAATC AAACACCAGA CTTTTCTGAA TCGTATTCAA GAAGAATTTA 
    AGTTGTGTGT ATATGAAGTT TGTGCAAGGT TTACCCAAAA AAAAAAGTTN 
    GNGTAAAATC AAGGTTTAAT GATNTGTTGA GTAGGNGANC AANATNGGAT 
    AAANAAGTCC CAATAANGGA TTTATNCNTC AATCTGCTTC CNTNTNAANA 
    AAAAAGTCCA ATCANCTTAN TCANAGTCCN AATAAGGATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1447301 [Map]; Strand: w
      • AT1G05030.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -5884; Region: intergenic
      • AT1G05040.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protei...
        Distance: 68; Region: intergenic
    Flanking Genome Sequence: 11-5094-1 - 3-prime edge 
    GTTATAAGTG GTTTGGCTGC AGAACCAAAT CATATGTACC AAATTTCTCC 
    TTCGGTCTCT TCTTTTCTTT GAAGTCTTTA TTGGTAAAAC CGCTTTTGCC 
    TGTTTTCTCC ATCTCCTGTT TCTTGTGTTG TGTCTTTCTA TCCAGCNTTC 
    TCTGTTATCA GTCTTTTTTC TTTGCCACTT CCTCGTCCCG ACCAAATTGA 
    GATCCTTTTT GGCTTTTAAA AATGAATTTC CATTCCCCAA ATGCAACNTT 
    GACTTACTCA AATGCAACGA CAAATTTGAT AACGAGACCG GTGTAGTGAC 
    GAAGCTAGAC CTATATGGTG CATGTCTCAG AGGCTCCCTC AATGCTAATA 
    GTAGTCTTTT CAGAGTTCAT CACCTCAGGT ATCTCGATCT CGCTTACAAC 
    CACTTTGACT CGTCCTCATT CTTCGCCCAA CTTGGAAGAC TCACCAACTG 
    AGAGGTCTTG CATCTAACTG GTATGGGCTT AGTCGGAGAA ATTCCATCCT 
    CAATCAGTAG CCTAAGCCGT CTTTACTTCC TTGAGCCTTT CACAAAACGA 
    ACTGACCGGT AGTTTTCCCC CTTTATACAA TCTAACCAAT AATCACTTTT 
    CTGGAAACCT TCCTTGTTCT CTACTCACCA TGCCTCTTGT GTCAGAGATT 
    CATTTGGACC AAAAATCATC TTAGCTACTC TCTTGAAACT ATGAATTGCT 
    CTTCATCATC ATCTCTGCT

AT1G05030.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3); Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588; Bacteria - 15264; Metazoa - 5199; Fungi - 6752; Plants - 2455; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05040.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05040.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR