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11-5116-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 871626 [Map]; Strand: c
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: -415; Region: promoter
      • AT1G03490.1 - [+] show detail - NAC domain containing protein 6
        Distance: -248; Region: promoter
    Flanking Genome Sequence: 11-5116-1 - 5-prime edge 
    GGCCCAACCG GATTTTCTTT TGTCAGCGAT TAACTATTTT TTGGAAAGAA 
    TAAGACGGTT GTAATTACAT CTATTTGGTT ATTTGAAATA ATAATTAGAT 
    AGGATTCGAA TCTATAATAC ACNTTTTGTT TTGTTTATCA CAGATTCTAA 
    CGATAGATAA AGATATATTA CATGACCATG ATTTATCCAC ATCAAAATAG 
    CATAGTGCCG TAAACCGGCT AATCGTTTTG GGCCTAATTT GGGCAATTAA 
    GCCCGTTAAG AAGGATAAGA GCCTATTGTG TATCAATATC TTCGGTTCGA 
    CCAAATTAAA CCGCAATTTT AATTTCGTGT CTGGTTTGGT TTCGGCTAAA 
    TAATTCAGAA GTGGTTTAGT CTGAGAAGAC TGGAACTGTG TTTTTCTTTT 
    ACCTTGAGCT GTTAAATAAA AAGGAAGAGC GGTCAAAATC AGTGGACGAC 
    GAAGACTTCT TATCATTTAA TATCTCTCCA TCATCATCTT CTTCTTCAGC 
    ATCAAATCCA AATTCGGATC AAACATGGCT TCTCACTCGT CGAGTTGGTT 
    TGCCATTTCC ATAAAGGATA TAGTTGAAAA CTCGAAGTTG AATATTATCC 
    TTTTCCCGAA AGAGATC

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03490.1

Model type
Protein coding
Short Description
NAC domain containing protein 6
Computational Description
NAC domain containing protein 6 (NAC006); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0; Bacteria - 33; Metazoa - 146; Fungi - 22; Plants - 1047; Viruses - 89; Other Eukaryotes - 435 (source: NCBI BLink).
Link
InterPro Scan - TAIR